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Nevin Manimala Statistics

Effect of Olive Oil Hydrogel as a Fat Replacer in Beef Meatballs

Food Technol Biotechnol. 2024 Mar;62(1):110-118. doi: 10.17113/ftb.62.01.24.8134.

ABSTRACT

RESEARCH BACKGROUND: Meat and meat products are essential sources of dietary saturated fatty acids. However, excessive consumption of meat and meat products may be harmful to human health. The study evaluates the effect of fat replacement with hydrogels (olive oil in water emulsions gelled by gelatine) in meatballs.

EXPERIMENTAL APPROACH: The effect of replacing fat with different ratios of hydrogel (control, 25 (F25), 50 (F50), 75 (F75) and 100 % (F100)) on the chemical (fatty acids and thiobarbituric acid reactive substances (TBARS)) and physical (cooking loss, diameter reduction, fat retention, water retention, colour and texture analysis) characteristics of the meatballs were analyzed.

RESULTS AND CONCLUSIONS: The fat content of raw meatball samples was reduced from (31.2±2.2) to (10.5±0.4) % in the sample with the highest fat substitution (F100). The energy levels of the F100 samples were almost 56 % lower than of the control group. Monounsaturated fatty acids (MUFAs) represented the dominant group in all substitution rates of the meatballs, followed by saturated fatty acids (SFAs) and finally polyunsaturated fatty acids (PUFAs). Among the raw meatball samples, the highest oxidation occurred in the F50 and F100 groups. However, it was determined that the difference between F25 and F75 and the difference between control and F75 were not statistically significant (p˃0.05). When the cooked samples were compared, the highest thiobarbituric acid (TBA) value was found in the F50 sample, followed by the F100 and F75 samples. The difference between the mean values of springiness and cohesiveness of the samples was not significant (p˃0.05). The hardness value of samples decreased significantly (p˂0.001) with >75 % fat replacement.

NOVELTY AND SCIENTIFIC CONTRIBUTION: It can be concluded that the oil replacement rate that may satisfy consumer demand without impairing the product technological and chemical quality should be <75 %. As the fat replacement ratio increases, the SFA content of cooked meatballs decreases, while the MUFA and PUFA contents increase. Considering the positive effects of reducing the intake of SFAs and increasing the intake of unsaturated fatty acids on non-communicable diseases such as cardiovascular diseases, fat replacement in meatballs is important for future developments.

PMID:38601965 | PMC:PMC11002449 | DOI:10.17113/ftb.62.01.24.8134

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Nevin Manimala Statistics

Causal Artificial Intelligence Models of Food Quality Data

Food Technol Biotechnol. 2024 Mar;62(1):102-109. doi: 10.17113/ftb.62.01.24.8301.

ABSTRACT

RESEARCH BACKGROUND: The aim of this study is to emphasize the importance of artificial intelligence (AI) and causality modelling of food quality and analysis with ‘big data’. AI with structural causal modelling (SCM), based on Bayesian networks and deep learning, enables the integration of theoretical field knowledge in food technology with process production, physicochemical analytics and consumer organoleptic assessments. Food products have complex nature and data are highly dimensional, with intricate interrelations (correlations) that are difficult to relate to consumer sensory perception of food quality. Standard regression modelling techniques such as multiple ordinary least squares (OLS) and partial least squares (PLS) are effectively applied for the prediction by linear interpolations of observed data under cross-sectional stationary conditions. Upgrading linear regression models by machine learning (ML) accounts for nonlinear relations and reveals functional patterns, but is prone to confounding and failed predictions under unobserved nonstationary conditions. Confounding of data variables is the main obstacle to applications of the regression models in food innovations under previously untrained conditions. Hence, this manuscript focuses on applying causal graphical models with Bayesian networks to infer causal relationships and intervention effects between process variables and consumer sensory assessment of food quality.

EXPERIMENTAL APPROACH: This study is based on the data available in the literature on the process of wheat bread baking quality, consumer sensory quality assessments of fermented milk products, and professional wine tasting data. The data for wheat baking quality were regularized by the least absolute shrinkage and selection operator (LASSO elastic net). Bayesian statistics was applied for the evaluation of the model joint probability function for inferring the network structure and parameters. The obtained SCMs are presented as directed acyclic graphs (DAG). D-separation criteria were applied to block confounding effects in estimating direct and total causal effects of process variables and consumer perception on food quality. Probability distributions of causal effects of the intervention of individual process variables on quality are presented as partial dependency plots determined by Bayesian neural networks. In the case of wine quality causality, the total causal effects determined by SCMs are positively validated by the double machine learning (DML) algorithm.

RESULTS AND CONCLUSIONS: The data set of 45 continuous variables corresponding to different chemical, physical and biochemical variables of wheat properties from seven Croatian cultivars during two years of controlled cultivation were analysed. LASSO regularization of the data set yielded the ten key predictors, accounting for 98 % variance of the baking quality data. Based on the key variables, the quality predictive random forest model with 75 % cross-validation accuracy was derived. Causal analysis between the quality and key predictors was based on the Bayesian model shown as a DAG graph. Protein content shows the most important direct causal effect with the corresponding path coefficient of 0.71, and THMM (total high-molecular-mass glutenin subunits) content was an indirect cause with a path coefficient of 0.42, and protein total average causal effect (ACE) was 0.65. The large data set of the quality of fermented milk products included binary consumer sensory data (taste, odour, turbidity), continuous physical variables (temperature, fat, pH, colour) and three grade classes of products by consumer quality assessment. A random forest model was derived for the prediction of the quality classification with an out-of-bag (OOB) error of 0.28 %. The Bayesian network model predicts that the direct causes of the taste classification are temperature, colour and fat content, while the direct causes of the quality classification are temperature, turbidity, odour and fat content. The key quality grade ACE of temperature -0.04 grade/°C and 0.3 quality grade/fat content were estimated. The temperature ACE dependency shows a nonlinear type as negative saturation with the ‘breaking’ point at 60 °C, while for fat ACE had a positive linear trend. Causal quality analysis of red and white wine was based on the large data set of eleven continuous variables of physical and chemical properties and quality assessments classified in ten classes, from 1 to 10. Each classification was obtained in triplicate by a panel of professional wine tasters. A non-structural double machine learning (DML) algorithm was applied for total ACE quality assessment. The alcohol content of red and white wine had the key positive ACE relative factor of 0.35 quality/alcohol, while volatile acidity had the key negative ACE of -0.2 quality/acidity. The obtained ACE predictions by the unstructured DML algorithm are in close agreement with the ACE obtained by the structural SCM.

NOVELTY AND SCIENTIFIC CONTRIBUTION: Novel methodologies and results for the application of causal artificial intelligence models in the analysis of consumer assessment of the quality of food products are presented. The application of Bayesian network structural causal models (SCM) enables the d-separation of pronounced effects of confounding between parameters in noncausal regression models. Based on the SCM, inference of ACE provides substantiated and validated research hypotheses for new products and support for decisions of potential interventions for improvement in product design, new process introduction, process control, management and marketing.

PMID:38601958 | PMC:PMC11002446 | DOI:10.17113/ftb.62.01.24.8301

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Nevin Manimala Statistics

Association between gut microbiota and autoimmune cholestatic liver disease, a Mendelian randomization study

Front Microbiol. 2024 Mar 27;15:1348027. doi: 10.3389/fmicb.2024.1348027. eCollection 2024.

ABSTRACT

BACKGROUND: Previous studies have suggested that the gut microbiota (GM) is closely associated with the development of autoimmune cholestatic liver disease (ACLD), but limitations, such as the presence of confounding factors, have resulted in a causal relationship between the gut microbiota and autoimmune cholestatic liver disease that remains uncertain. Thus, we used two-sample Mendelian randomization as a research method to explore the causal relationship between the two.

METHODS: Pooled statistics of gut microbiota from a meta-analysis of genome-wide association studies conducted by the MiBioGen consortium were used as an instrumental variable for exposure factors. The Pooled statistics for primary biliary cholangitis (PBC) and primary sclerosing cholangitis (PSC) were obtained from the R9 version of the FinnGen database (https://r9.finngen.fi/). Inverse-variance Weighted (IVW), cML-MA, MR-Egger regression, Weighted median (WME), Weighted mode (WM), and Simple mode (SM) were used to detect the association between intestinal flora and the causal relationship between intestinal flora and ACLD, in which IVW method was dominant, was assessed based on the effect indicator dominance ratio (odds ratio, OR) and 95% confidence interval (CI). Sensitivity analysis, heterogeneity test, gene pleiotropy test, MR pleiotropy residual sum and outlier test (MR-PRESSO) were combined to verify the stability and reliability of the results. Reverse Mendelian randomization analysis was performed on gut microbiota and found to be causally associated with ACLD.

RESULTS: The IVW results showed that the relative abundance of the genus Clostridium innocuum group, genus Butyricicoccus, and genus Erysipelatoclostridium was negatively correlated with the risk of PBC, that is, increased abundance reduced the risk of PBC and was a protective, and the relative abundance of the genus Eubacterium hallii was positively correlated with the risk of PSC, which is a risk factor for PSC. Family Clostridiaceae1 and family Lachnospiraceae were negatively correlated with the risk of PSC, which is a protective factor for PSC.

CONCLUSION: This study found a causal relationship between gut microbiota and ACLD. This may provide valuable insights into gut microbiota-mediated pathogenesis of ACLD. It is necessary to conduct a large-sample randomized controlled trial (RCT) at a later stage to validate the associated role of the relevant gut microbiota in the risk of ACLD development and to explore the associated mechanisms.

PMID:38601930 | PMC:PMC11004368 | DOI:10.3389/fmicb.2024.1348027

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In vitro evaluation of the binding activity of novel mouse IgG1 opsonic monoclonal antibodies to Mycobacterium tuberculosis and other selected mycobacterial species

J Clin Tuberc Other Mycobact Dis. 2024 Apr 1;35:100435. doi: 10.1016/j.jctube.2024.100435. eCollection 2024 May.

ABSTRACT

Antimicrobial resistance alongside other challenges in tuberculosis (TB) therapeutics have stirred renewed interest in host-directed interventions, including the role of antibodies as adjunct therapeutic agents. This study assessed the binding efficacy of two novel IgG1 opsonic monoclonal antibodies (MABs; GG9 & JG7) at 5, 10, and 25 µg/mL to live cultures of Mycobacterium tuberculosis, M. avium, M. bovis, M. fortuitum, M. intracellulare, and M. smegmatis American Type Culture Collection laboratory reference strains, as well as clinical susceptible, multi-drug resistant, and extensively drug resistant M. tuberculosis strains using indirect enzyme-linked immunosorbent assays. These three MAB concentrations were selected from a range of concentrations used in previous optimization (binding and functional) assays. Both MABs bound to all mycobacterial species and sub-types tested, albeit to varying degrees. Statistically significant differences in MAB binding activity were observed when comparing the highest and lowest MAB concentrations (p < 0.05) for both MABs GG9 and JG7, irrespective of the M. tuberculosis resistance profile. Binding affinity increased with an increase in MAB concentration, and optimal binding was observed at 25 µg/mL. JG7 showed better binding activity than GG9. Both MABs also bound to five MOTT species, albeit at varied levels. This non-selective binding to different mycobacterial species suggests a potential role for GG9 and JG7 as adjunctive agents in anti-TB chemotherapy with the aim to enhance bacterial killing.

PMID:38601919 | PMC:PMC11004620 | DOI:10.1016/j.jctube.2024.100435

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Nevin Manimala Statistics

Synaptic density patterns in early Alzheimer’s disease assessed by independent component analysis

Brain Commun. 2024 Mar 26;6(2):fcae107. doi: 10.1093/braincomms/fcae107. eCollection 2024.

ABSTRACT

Synaptic loss is a primary pathology in Alzheimer’s disease and correlates best with cognitive impairment as found in post-mortem studies. Previously, we observed in vivo reductions of synaptic density with [11C]UCB-J PET (radiotracer for synaptic vesicle protein 2A) throughout the neocortex and medial temporal brain regions in early Alzheimer’s disease. In this study, we applied independent component analysis to synaptic vesicle protein 2A-PET data to identify brain networks associated with cognitive deficits in Alzheimer’s disease in a blinded data-driven manner. [11C]UCB-J binding to synaptic vesicle protein 2A was measured in 38 Alzheimer’s disease (24 mild Alzheimer’s disease dementia and 14 mild cognitive impairment) and 19 cognitively normal participants. [11C]UCB-J distribution volume ratio values were calculated with a whole cerebellum reference region. Principal components analysis was first used to extract 18 independent components to which independent component analysis was then applied. Subject loading weights per pattern were compared between groups using Kruskal-Wallis tests. Spearman’s rank correlations were used to assess relationships between loading weights and measures of cognitive and functional performance: Logical Memory II, Rey Auditory Verbal Learning Test-long delay, Clinical Dementia Rating sum of boxes and Mini-Mental State Examination. We observed significant differences in loading weights among cognitively normal, mild cognitive impairment and mild Alzheimer’s disease dementia groups in 5 of the 18 independent components, as determined by Kruskal-Wallis tests. Only Patterns 1 and 2 demonstrated significant differences in group loading weights after correction for multiple comparisons. Excluding the cognitively normal group, we observed significant correlations between the loading weights for Pattern 1 (left temporal cortex and the cingulate gyrus) and Clinical Dementia Rating sum of boxes (r = -0.54, P = 0.0019), Mini-Mental State Examination (r = 0.48, P = 0.0055) and Logical Memory II score (r = 0.44, P = 0.013). For Pattern 2 (temporal cortices), significant associations were demonstrated between its loading weights and Logical Memory II score (r = 0.34, P = 0.0384). Following false discovery rate correction, only the relationship between the Pattern 1 loading weights with Clinical Dementia Rating sum of boxes (r = -0.54, P = 0.0019) and Mini-Mental State Examination (r = 0.48, P = 0.0055) remained statistically significant. We demonstrated that independent component analysis could define coherent spatial patterns of synaptic density. Furthermore, commonly used measures of cognitive performance correlated significantly with loading weights for two patterns within only the mild cognitive impairment/mild Alzheimer’s disease dementia group. This study leverages data-centric approaches to augment the conventional region-of-interest-based methods, revealing distinct patterns that differentiate between mild cognitive impairment and mild Alzheimer’s disease dementia, marking a significant advancement in the field.

PMID:38601916 | PMC:PMC11004947 | DOI:10.1093/braincomms/fcae107

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Development and field evaluation of a novel sugar bait device for controlling residential vector mosquitoes in Zhejiang Province, China

Front Vet Sci. 2024 Mar 27;11:1364740. doi: 10.3389/fvets.2024.1364740. eCollection 2024.

ABSTRACT

BACKGROUND: Mosquito-borne diseases pose serious public health threats in Zhejiang Province, China, and vector control is believed to be the primary method for reducing transmission. Due to severe resistance problems, effective and sustainable methods without chemical insecticides are urgently required to control mosquito vectors. Attractive toxic sugar baits (ATSB) are newly developed methods to control mosquitoes in recent decades with the core element sugar bait, which was invented according to the sugar-feeding behavior of mosquitoes. In this study, we developed a Novel Sugar Bait Device (NSBD) trap by combining sugar bait and physical adhesive capture technology. The study aimed to evaluate the effect of the NSBD trap on controlling mosquitoes in residential environments and to identify the optimal sugar solution concentration in the sugar bait of the NSBD for real use.

METHODS: Four residential villages in Ningbo City with similar geographic environments and mosquito densities were selected for field trials in 2022. One village (site 1) was designated as the control group, and three villages (sites 2-4) served as the test groups to assess the effectiveness of NSBD traps with different sugar solution concentrations (6, 8, and 10%) in the sugar bait. Larval and adult mosquito densities were monitored monthly before and semi-monthly after the trials using the CDC light trap and larval pipette method.

RESULTS: Before the trials, we monitored mosquito density for 3 months to confirm the baseline mosquito density among the four sites, and no statistical differences in adult and larval mosquitoes were found (adult, F = 3.047, p > 0.05; larvae, F = 0.436, p > 0.05). After the trials, all NCBD traps effectively controlled larval and adult mosquito densities, with the highest standard decrease rates of larval and adult mosquito densities at 57.80 and 86.31%, respectively, observed in site 4. The most suitable sugar solution concentration in the sugar bait was 10%.

CONCLUSION: NSBD traps effectively controlled mosquitoes in residential environments during field trials. Without the use of insecticides, this may be a promising choice for mosquito vector control to prevent mosquito-borne diseases.

PMID:38601912 | PMC:PMC11004449 | DOI:10.3389/fvets.2024.1364740

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Polygenic risk and incident coronary heart disease in a large multiethnic cohort

Am J Prev Cardiol. 2024 Mar 28;18:100661. doi: 10.1016/j.ajpc.2024.100661. eCollection 2024 Jun.

ABSTRACT

OBJECTIVE: Many studies support the notion that polygenic risk scores (PRS) improve risk prediction for coronary heart disease (CHD) beyond conventional risk factors. However, PRS are not yet considered risk-enhancing factor in guidelines. Our objective was to determine the predictive performance of a commercially available PRS (CARDIO inCode-Score®) compared with the Pooled Cohorts Equations (PCE) in a contemporary, multi-ethnic cohort.

METHODS: Participants (n = 63,070; 67 % female; 18 % non-European) without prior CHD were followed from 2007 through 12/31/2022. The association between the PRS and incident CHD was assessed using Cox regression adjusting for genetic ancestry and risk factors. Event rates were estimated by categories of PCE and by low/intermediate/high genetic risk within PCE categories; risk discrimination and net reclassification improvement (NRI) were also assessed.

RESULTS: There were 3,289 incident CHD events during 14 years of follow-up. Adjusted hazard ratio (aHR) for incident CHD per 1 SD increase in PRS was 1.18 (95 % CI:1.14-1.22), and the aHR for the upper vs lower quintile of the PRS was 1.66 (95 % CI:1.49-1.86). The association was consistent in both sexes, in European participants compared with all minority groups combined and was strongest in the first 5 years of follow-up. The increase in the C-statistic was 0.004 (0.747 vs. 0.751; p < 0.0001); the NRI was 2.4 (0.9-3.8) for the entire cohort and 9.7 (7.5-12.0) for intermediate PCE risk individuals. After incorporating high genetic risk, a further 10 percent of participants at borderline/intermediate PCE risk would be candidates for statin therapy.

CONCLUSION: Inclusion of polygenic risk improved identification of primary prevention individuals who may benefit from more intensive risk factor modification.

PMID:38601895 | PMC:PMC11004687 | DOI:10.1016/j.ajpc.2024.100661

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Influence of vitamin D supplementation on growth, body composition, pubertal development and spirometry in South African schoolchildren: a randomised controlled trial (ViDiKids)

BMJ Paediatr Open. 2024 Apr 10;8(1):e002495. doi: 10.1136/bmjpo-2024-002495.

ABSTRACT

OBJECTIVE: To determine whether weekly oral vitamin D supplementation influences growth, body composition, pubertal development or spirometric outcomes in South African schoolchildren.

DESIGN: Phase 3 double-blind randomised placebo-controlled trial.

SETTING: Socioeconomically disadvantaged peri-urban district of Cape Town, South Africa.

PARTICIPANTS: 1682 children of black African ancestry attending government primary schools and aged 6-11 years at baseline.

INTERVENTIONS: Oral vitamin D3 (10 000 IU/week) versus placebo for 3 years.

MAIN OUTCOME MEASURES: Height-for-age and body mass index-for-age, measured in all participants; Tanner scores for pubertal development, spirometric lung volumes and body composition, measured in a subset of 450 children who additionally took part in a nested substudy.

RESULTS: Mean serum 25-hydroxyvitamin D3 concentration at 3-year follow-up was higher among children randomised to receive vitamin D versus placebo (104.3 vs 64.7 nmol/L, respectively; mean difference (MD) 39.7 nmol/L, 95% CI 37.6 to 41.9 nmol/L). No statistically significant differences in height-for-age z-score (adjusted MD (aMD) -0.08, 95% CI -0.19 to 0.03) or body mass index-for-age z-score (aMD -0.04, 95% CI -0.16 to 0.07) were seen between vitamin D versus placebo groups at follow-up. Among substudy participants, allocation to vitamin D versus placebo did not influence pubertal development scores, % predicted forced expiratory volume in 1 s (FEV1), % predicted forced vital capacity (FVC), % predicted FEV1/FVC, fat mass or fat-free mass.

CONCLUSIONS: Weekly oral administration of 10 000 IU vitamin D3 boosted vitamin D status but did not influence growth, body composition, pubertal development or spirometric outcomes in South African schoolchildren.

TRIAL REGISTRATION NUMBERS: ClinicalTrials.gov NCT02880982, South African National Clinical Trials Register DOH-27-0916-5527.

PMID:38599800 | DOI:10.1136/bmjpo-2024-002495

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Contemporary 1-Year Outcomes of Mitral Valve-in-Ring With Balloon-Expandable Aortic Transcatheter Valves in the U.S

JACC Cardiovasc Interv. 2024 Apr 8;17(7):874-886. doi: 10.1016/j.jcin.2024.02.012.

ABSTRACT

BACKGROUND: Adequate valve performance after surgical mitral valve repair with an annuloplasty ring is not always sustained over time. The risk of repeat mitral valve surgery may be high in these patients. Transcatheter mitral valve-in-ring (MViR) is emerging as an alternative for high-risk patients.

OBJECTIVES: The authors sought to assess contemporary outcomes of MViR using third-generation balloon-expandable aortic transcatheter heart valves.

METHODS: Patients who underwent MViR and were enrolled in the STDS/ACC TVT (Society of Thoracic Surgeons/American College of Cardiology Transcatheter Valve Therapy) Registry between August 2015 and December 2022 were analyzed.

RESULTS: A total of 820 patients underwent MViR at 236 sites, mean age was 72.2 ± 10.4 years, 50.9% were female, mean STS score was 8.2% ± 6.9%, and most (78%) were in NYHA functional class III to IV. Mean left ventricular ejection fraction was 47.8% ± 14.2%, mean mitral gradient was 8.9 ± 7.0 mm Hg, and 75.5% had ≥ moderate mitral regurgitation. Access was transseptal in 93.9% with 88% technical success. All-cause mortality at 30 days was 8.3%, and at 1 year, 22.4%, with a reintervention rate of 9.1%. At 1-year follow-up, 75.6% were NYHA functional class I to II, Kansas City Cardiomyopathy Questionnaire score increased by 25.9 ± 29.1 points, mean mitral valve gradient was 8.4 ± 3.4 mm Hg, and 91.7% had ≤ mild mitral regurgitation.

CONCLUSIONS: MViR with third-generation balloon-expandable aortic transcatheter heart valves is associated with a significant reduction in mitral regurgitation and improvement in symptoms at 1 year, but with elevated valvular gradients and a high reintervention rate. MViR is a reasonable alternative for high-risk patients unable undergo surgery who have appropriate anatomy for the procedure. (STS/ACC TVT Registry Mitral Module [TMVR]; NCT02245763).

PMID:38599690 | DOI:10.1016/j.jcin.2024.02.012

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Associations between life course longitudinal growth and hip shapes at ages 60-64 years: evidence from the MRC National Survey of Health and Development

RMD Open. 2024 Apr 10;10(2):e003816. doi: 10.1136/rmdopen-2023-003816.

ABSTRACT

OBJECTIVE: We sought to examine associations between height gain across childhood and adolescence with hip shape in individuals aged 60-64 years from the Medical Research Council National Survey of Health and Development, a nationally representative British birth cohort.

METHODS: Height was measured at ages 2, 4, 6, 7, 11 and 15 years, and self-reported at age 20 years. 10 modes of variation in hip shape (HM1-10), described by statistical shape models, were previously ascertained from DXA images taken at ages 60-64 years. Associations between (1) height at each age; (2) Super-Imposition by Translation And Rotation (SITAR) growth curve variables of height size, tempo and velocity; and (3) height gain during specific periods of childhood and adolescence, and HM1-10 were tested.

RESULTS: Faster growth velocity was associated with a wider, flatter femoral head and neck, as described by positive scores for HM6 (regression coefficient 0.014; 95% CI 0.08 to 0.019; p<0.001) and HM7 (regression coefficient 0.07; 95% CI 0.002 to 0.013; p=0.009), and negative scores for HM10 (regression coefficient -0.006; 95% CI -0.011 to 0.00, p=0.04) and HM2 (males only, regression coefficient -0.017; 95% CI -0.026 to -0.09; p<0.001). Similar associations were observed with greater height size and later height tempo. Examination of height gains during specific periods of childhood and adolescence identified those during the adolescence period as being most consistently associated.

CONCLUSION: Our analyses suggest that individual growth patterns, particularly in the adolescent period, are associated with modest variations in hip shape at 60-64 years, which are consistent with features seen in osteoarthritis.

PMID:38599656 | DOI:10.1136/rmdopen-2023-003816