Physiol Meas. 2023 Nov 9. doi: 10.1088/1361-6579/ad0b3d. Online ahead of print.
ABSTRACT
OBJECTIVE: To extend the highly successful U-Net Convolutional Neural Network architecture, which is limited to rectangular pixel/voxel domains, to a graph-based equivalent that works flexibly on irregular meshes; and demonstrate the effectiveness on Electrical Impedance Tomography (EIT).
APPROACH: By interpreting the irregular mesh as a graph, we develop a graph U-Net with new cluster pooling and unpooling layers that mimic the classic neighborhood based max-pooling important for imaging applications. Main~Results: The proposed graph U-Net is shown to be flexible and effective for improving early iterate Total Variation (TV) reconstructions from EIT measurements, using as little as the first iteration. The performance is evaluated for simulated data, and on experimental data from three measurement devices with different measurement geometries and instrumentations. We successfully show that such networks can be trained with a simple two-dimensional simulated training set, and generalize to very different domains, including measurements from a three-dimensional device and subsequent 3D reconstructions.
SIGNIFICANCE: As many inverse problems are solved on irregular (e.g. finite element) meshes, the proposed graph U-Net and pooling layers provide the added flexibility to process directly on the computational mesh. Post-processing an early iterate reconstruction greatly reduces the computational cost which can become prohibitive in higher dimensions with dense meshes. As the graph structure is independent of `dimension’, the flexibility to extend networks trained on 2D domains to 3D domains offers a possibility to further reduce computational cost in training.
PMID:37944184 | DOI:10.1088/1361-6579/ad0b3d
