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Nevin Manimala Statistics

Development and Validation of a Deep Learning-Based Synthetic Bone-Suppressed Model for Pulmonary Nodule Detection in Chest Radiographs

JAMA Netw Open. 2023 Jan 3;6(1):e2253820. doi: 10.1001/jamanetworkopen.2022.53820.

ABSTRACT

IMPORTANCE: Dual-energy chest radiography exhibits better sensitivity than single-energy chest radiography, partly due to its ability to remove overlying anatomical structures.

OBJECTIVES: To develop and validate a deep learning-based synthetic bone-suppressed (DLBS) nodule-detection algorithm for pulmonary nodule detection on chest radiographs.

DESIGN, SETTING, AND PARTICIPANTS: This decision analytical modeling study used data from 3 centers between November 2015 and July 2019 from 1449 patients. The DLBS nodule-detection algorithm was trained using single-center data (institute 1) of 998 chest radiographs. The DLBS algorithm was validated using 2 external data sets (institute 2, 246 patients; and institute 3, 205 patients). Statistical analysis was performed from March to December 2021.

EXPOSURES: DLBS nodule-detection algorithm.

MAIN OUTCOMES AND MEASURES: The nodule-detection performance of DLBS model was compared with the convolution neural network nodule-detection algorithm (original model). Reader performance testing was conducted by 3 thoracic radiologists assisted by the DLBS algorithm or not. Sensitivity and false-positive markings per image (FPPI) were compared.

RESULTS: Training data consisted of 998 patients (539 men [54.0%]; mean [SD] age, 54.2 [9.82] years), and 2 external validation data sets consisted of 246 patients (133 men [54.1%]; mean [SD] age, 55.3 [8.7] years) and 205 patients (105 men [51.2%]; mean [SD] age, 51.8 [9.1] years). Using the external validation data set of institute 2, the bone-suppressed model showed higher sensitivity compared with that of the original model for nodule detection (91.5% [109 of 119] vs 79.8% [95 of 119]; P < .001). The overall mean of FPPI with the bone-suppressed model was reduced compared with the original model (0.07 [17 of 246] vs 0.09 [23 of 246]; P < .001). For the observer performance testing with the data of institute 3, the mean sensitivity of 3 radiologists was 77.5% (95% [CI], 69.9%-85.2%), whereas that of radiologists assisted by DLBS modeling was 92.1% (95% CI, 86.3%-97.3%; P < .001). The 3 radiologists had a reduced number of FPPI when assisted by the DLBS model (0.071 [95% CI, 0.041-0.111] vs 0.151 [95% CI, 0.111-0.210]; P < .001).

CONCLUSIONS AND RELEVANCE: This decision analytical modeling study found that the DLBS model was more sensitive to detecting pulmonary nodules on chest radiographs compared with the original model. These findings suggest that the DLBS model could be beneficial to radiologists in the detection of lung nodules in chest radiographs without need of the specialized equipment or increase of radiation dose.

PMID:36719681 | DOI:10.1001/jamanetworkopen.2022.53820

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Nevin Manimala Statistics

Assessment of the Role of Artificial Intelligence in the Association Between Time of Day and Colonoscopy Quality

JAMA Netw Open. 2023 Jan 3;6(1):e2253840. doi: 10.1001/jamanetworkopen.2022.53840.

ABSTRACT

IMPORTANCE: Time of day was associated with a decline in adenoma detection during colonoscopy. Artificial intelligence (AI) systems are effective in improving the adenoma detection rate (ADR), but the performance of AI during different times of the day remains unknown.

OBJECTIVE: To validate whether the assistance of an AI system could overcome the time-related decline in ADR during colonoscopy.

DESIGN, SETTING, AND PARTICIPANTS: This cohort study is a secondary analysis of 2 prospective randomized controlled trials (RCT) from Renmin Hospital of Wuhan University. Consecutive patients undergoing colonoscopy were randomly assigned to either the AI-assisted group or unassisted group from June 18, 2019, to September 6, 2019, and July 1, 2020, to October 15, 2020. The ADR of early and late colonoscopy sessions per half day were compared before and after the intervention of the AI system. Data were analyzed from March to June 2022.

EXPOSURE: Conventional colonoscopy or AI-assisted colonoscopy.

MAIN OUTCOMES AND MEASURES: Adenoma detection rate.

RESULTS: A total of 1780 patients (mean [SD] age, 48.61 [13.35] years, 837 [47.02%] women) were enrolled. A total of 1041 procedures (58.48%) were performed in early sessions, with 357 randomized into the unassisted group (34.29%) and 684 into the AI group (65.71%). A total of 739 procedures (41.52%) were performed in late sessions, with 263 randomized into the unassisted group (35.59%) and 476 into the AI group (64.41%). In the unassisted group, the ADR in early sessions was significantly higher compared with that of late sessions (13.73% vs 5.70%; P = .005; OR, 2.42; 95% CI, 1.31-4.47). After the intervention of the AI system, as expected, no statistically significant difference was found (22.95% vs 22.06%, P = .78; OR, 0.96; 95% CI; 0.71-1.29). Furthermore, the AI systems showed better assistance ability on ADR in late sessions compared with early sessions (odds ratio, 3.81; 95% CI, 2.10-6.91 vs 1.60; 95% CI, 1.10-2.34).

CONCLUSIONS AND RELEVANCE: In this cohort study, AI systems showed higher assistance ability in late sessions per half day, which suggests the potential to maintain high quality and homogeneity of colonoscopies and further improve endoscopist performance in large screening programs and centers with high workloads.

PMID:36719680 | DOI:10.1001/jamanetworkopen.2022.53840

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Nevin Manimala Statistics

A 25-Hour Fast Among Quiescent Hereditary Coproporphyria and Variegate Porphyria Patients is Associated With a Low Risk of Complications

Rambam Maimonides Med J. 2023 Jan 29;14(1). doi: 10.5041/RMMJ.10490.

ABSTRACT

OBJECTIVE: In patients with acute hepatic porphyria (AHP), prolonged fasting is a known trigger of AHP attacks. Despite this, some Jewish AHP patients-mainly hereditary coproporphyria (HCP) and variegate porphyria (VP) patients-fast for 25 consecutive hours during the traditional Jewish holy day known as Yom Kippur. In this study, we evaluated the effect of the fast on these patients.

METHODS: A retrospective study and survey of AHP patients in Israel was carried out. Patients were asked whether they have fasted and whether any symptoms were induced by this fast. Patients’ medical records were reviewed for an emergency department (ED) visit following Yom Kippur between 2007 and 2019. Only 3 acute intermittent porphyria (AIP) patients reported fasting; they were excluded from analysis.

RESULTS: A total of 21 HCP patients and 40 VP patients completed the survey; 30 quiescent patients reported they fast, while 31 did not fast. The majority of fasting patients (96.67%) reported no symptoms following a fast. We found no statistically significant association between ED visits 1 week (0.26% in both fasting and non-fasting patients) or 1 month (2.1% visits in non-fasting versus 0.78% in fasting patients) following Yom Kippur. Of the symptomatic ED visits following a fast, none were defined as severe attacks.

CONCLUSION: A 25-hour fast in stable HCP and VP patients did not increase the risk of an acute attack and can probably be regarded as safe.

PMID:36719670 | DOI:10.5041/RMMJ.10490

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Nevin Manimala Statistics

Verification Phase Confirms V̇O2max in a Hot Environment in Sedentary Untrained Males

Med Sci Sports Exerc. 2023 Jan 16. doi: 10.1249/MSS.0000000000003126. Online ahead of print.

ABSTRACT

PURPOSE: To assess the V̇O2 uptake obtained during a GXT and subsequent verification phase in untrained participants in a hot environment.

METHODS: Twelve sedentary males completed a GXT followed by a biphasic supramaximal-load verification phase in a hot environment (39 ° C, 32% relative humidity). Rest between tests occurred in a temperate chamber and lasted until gastrointestinal temperature returned to baseline.

RESULTS: Mean verification phase V̇O2max (37.8 ± 4.3 mL·kg-1·min-1) was lower than GXT (39.8 ± 4.1 mL·kg-1·min-1; p = 0.03) and not statistically equivalent. Using an individualized analysis approach, only 17% (2/12) of participants achieved a V̇O2 plateau during the GXT. Verification phase confirmed GXT V̇O2max in 100% of participants while the traditional and the new age dependent secondary V̇O2max criteria indicated GXT V̇O2max achievement at much lower rates (8/12 [67%] vs. 7/12 [58%], respectively). Correlational indices between GXT and verification phase V̇O2max were strong (ICC = 0.95; r = 0.86) and Bland-Altman analysis revealed a low mean bias of -2.1 ± 1.9 mL·kg-1·min-1 and 95% limits of agreement (-5.8 to 1.7 mL·kg-1·min-1).

CONCLUSIONS: Very few untrained males achieved a V̇O2 plateau during GXT in the heat. When conducting GXT in a hot condition, the verification phase remains a valuable addition to confirm V̇O2max in untrained males.

PMID:36719655 | DOI:10.1249/MSS.0000000000003126

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Nevin Manimala Statistics

Validation of ACT24 Version 2.0 for Estimating Behavioral Domains, Active and Sedentary Time

Med Sci Sports Exerc. 2023 Jan 30. doi: 10.1249/MSS.0000000000003135. Online ahead of print.

ABSTRACT

PURPOSE: The purpose of this study is to determine the criterion validity of Activities Completed over Time (ACT24), an automated previous day recall tool designed for mobile devices for 1) estimating sedentary vs active time compared to an activPAL; and 2) estimating time spent in activity domains (e.g., work, household, leisure) compared to direct observation (DO).

METHODS: Over a 7-day study period, 53 participants were sent invitations to complete three automated ACT24 recalls and to wear an activPAL device. A subset (N = 24) consented to two, 3-hour video recorded DO sessions. activPAL and ACT24 data were matched by date, and agreement for sedentary versus active time was compared between methods using paired t-tests for mean differences and spearman correlations. We compared DO and ACT24 results by domain for overall time-use and separately for sedentary and active time using Kappa statistics and tested mean differences with linear mixed models.

RESULTS: Compared to the activPAL, the mean difference in ACT24 sedentary time was 1.9% (mean [95%CI] -0.17 [-0.75,0.40] hrs/day) and the mean difference for ACT24 active time was 2.2% (0.14 [-0.32,0.60] hrs/day). Correlations were R = 0.61 (95% CI: [0.39, 0.76]) and R = 0.65 (0.44, 0.78) for sedentary and active time, respectively. Domain-specific agreement was substantial for leisure-time, work, and shopping/errands (Kappa range: 0.63-0.79), moderate for transportation (Kappa = 0.49) and fair for personal care and household activities (Kappa: 0.24 and 0.33). ACT24 estimates of average time within each domain were not significantly different than DO.

CONCLUSIONS: The present study confirms that ACT24 is accurate for group-level estimation of active and sedentary time. Domain-specific agreement tended to be higher for more commonly reported activities and those that were of longer duration.

PMID:36719650 | DOI:10.1249/MSS.0000000000003135

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Nevin Manimala Statistics

The Impact of an Educational Intervention on Neonatal Care and Survival

J Perinat Neonatal Nurs. 2023 Jan 30. doi: 10.1097/JPN.0000000000000686. Online ahead of print.

ABSTRACT

OBJECTIVE: Under-5 mortality has declined globally; however, proportion of under-5 deaths occurring within the first 28 days after birth has increased significantly. This study aims to determine the impact of an educational intervention on neonatal care and survival rates in Nigeria.

METHODS: This was a sequential exploratory mixed-methods design involving 21 health workers in the preintervention phase, while 15 health workers and 30 mother-baby dyads participated in the postintervention phase. Data were collected using semistructured interviews and nonparticipatory observation. Qualitative data were analyzed using thematic analysis, while quantitative data were analyzed using descriptive and inferential statistics.

RESULTS: Healthy newborns were routinely separated from their mothers in the preintervention period. During this time, non-evidence-based practices, such as routine nasal and oral suctioning, were performed. Skin-to-skin contact and early initiation of breastfeeding were frequently interrupted. After the intervention, 80.6% were placed in skin-to-skin contact with their mothers, and 20 of these babies maintained contact with the mother until breastfeeding was established. There was decline in neonatal deaths post-intervention. Independent t-test analysis of the day of neonatal death demonstrates a significant difference in mean (P = .00, 95% confidence interval -5.629; -7.447 to -4.779).

CONCLUSION: Newborn survival can be improved through regular training of maternity health workers in evidence-based newborn care.

PMID:36719649 | DOI:10.1097/JPN.0000000000000686

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Nevin Manimala Statistics

Assessment of Compassion Fatigue and Empathy Levels in Nurses During the COVID-19 Outbreak: Turkey’s Case

J Relig Health. 2023 Jan 31. doi: 10.1007/s10943-023-01749-z. Online ahead of print.

ABSTRACT

This study was conducted to determine the compassion fatigue level of nurses and to review several variables believed to be associated with it; in addition, an assessment is made of empathy levels in the same group. This is a cross-sectional study conducted from December 2021 to May 2022 on nurses working at a city hospital linked to the Turkish Ministry of Health. The study group consisted of 616 nurses. A Personal Information Form, the Compassion Fatigue-Short Scale (CF-SS), and the Jefferson Scale of Empathy were used to collect data. Data were collected through face-to-face interviews. Student’s t-test, One-Way Analysis of Variance, and Multiple Linear Regression Analysis were used for data analysis. The statistical significance value was accepted as p < 0.05. The study group consisted of 499 (81.0%) females and 117 (19.0%) males, and their ages ranged from 20 to 51, with a mean age of 29.2 ± 6.9 years. The scores obtained from the CF-SS ranged from 16 to 130, with a mean score of 70.96 ± 25.04. The level of compassion fatigue was found to be higher in participants with a low family income, those who work more than 40 h a week, those who chose their profession unwillingly, those who are not satisfied with their profession, and those with a history of contact with a COVID-19 patient (p < 0.05 for each group). There was a significant association between levels of compassion fatigue and empathy (r = 0.92; p = 0.220). The level of compassion fatigue was found to be moderate in the nurses observed. The factors affecting the level of compassion fatigue included gender, family income, reasons for choosing nursing as a profession, the number of patients given daily care by the nurses, satisfaction with their profession, and history of contact with a COVID-19 patient. More extensive studies focusing on the association between compassion fatigue and empathy in nurses are needed.

PMID:36719601 | DOI:10.1007/s10943-023-01749-z

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Nevin Manimala Statistics

Joint probability analysis of streamflow and sediment load based on hybrid copula

Environ Sci Pollut Res Int. 2023 Jan 31. doi: 10.1007/s11356-023-25344-7. Online ahead of print.

ABSTRACT

Statistical analysis of streamflow and sediment is very important for integrated watershed management and the design of water infrastructure, especially in silt-rich rivers. Here, we propose a bivariate joint distribution framework based on nonparametric kernel density estimation (KDE) and a hybrid copula function to describe the complex streamflow-sediment dependent structure. In this framework, the non-parametric KDE is used to fit the marginal distribution function of streamflow and sediment variables, and then the hybrid copula function is constructed by using the linear combination of Clayton, Frank, and Gumbel copulas, and compared with five commonly used single copulas (Clayton, Frank, Gumbel, Gaussian, and t). We use the Jinsha River Basin (JRB) in the Yangtze River’s (JR) upper reaches to verify the proposed method. The results show the following: (1) Compared with the gamma distribution (Gamma) and generalized extreme value (GEV) distribution of parameters, the marginal distribution function of streamflow and sediment variables can be effectively obtained based on nonparametric KDE. (2) Compared with the single copula, the hybrid copula function more fully reflects the complex dependent structure of streamflow and sediment variables. (3) Compared with the best single copula, the precision of return period based on hybrid copula can be increased by 7.41%. In addition, the synchronous probability of streamflow and sediment in JRB is 0.553, and the asynchronous probability of streamflow and sediment is 0.447. This study can not only improve the accuracy of streamflow and sediment statistical analysis in JRB, but also provide a useful framework for other bivariate joint probability analysis.

PMID:36719583 | DOI:10.1007/s11356-023-25344-7

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Nevin Manimala Statistics

The Current State of Liver Transplantation for Colorectal Liver Metastases in the United States: A Call for Standardized Reporting

Ann Surg Oncol. 2023 Jan 31. doi: 10.1245/s10434-023-13147-6. Online ahead of print.

ABSTRACT

BACKGROUND: Current success in transplant oncology for select liver tumors, such as hepatocellular carcinoma, has ignited international interest in liver transplantation (LT) as a therapeutic option for nonresectable colorectal liver metastases (CRLM). In the United States, the CRLM LT experience is limited to reports from a handful of centers. This study was designed to summarize donor, recipient, and transplant center characteristics and posttransplant outcomes for the indication of CRLM.

METHODS: Adult, primary LT patients listed between December 2017 and March 2022 were identified by using United Network Organ Sharing database. LT for CRLM was identified from variables: “DIAG_OSTXT”; “DGN_OSTXT_TCR”; “DGN2_OSTXT_TCR”; and “MALIG_TY_OSTXT.”

RESULTS: During this study period, 64 patients were listed, and 46 received LT for CRLM in 15 centers. Of 46 patients who underwent LT for CRLM, 26 patients (56.5%) received LTs using living donor LT (LDLT), and 20 patients received LT using deceased donor (DDLT) (43.5%). The median laboratory MELD-Na score at the time of listing was statistically similar between the LDLT and DDLT groups (8 vs. 9, P = 0.14). This persisted at the time of LT (8 vs. 12, P = 0.06). The 1-, 2-, and 3-year, disease-free, survival rates were 75.1, 53.7, and 53.7%. Overall survival rates were 89.0, 60.4, and 60.4%, respectively.

CONCLUSIONS: This first comprehensive U.S. analysis of LT for CRLM suggests a burgeoning interest in high-volume U.S. transplant centers. Strategies to optimize patient selection are limited by the scarce oncologic history provided in UNOS data, warranting a separate registry to study LT in CRLM.

PMID:36719568 | DOI:10.1245/s10434-023-13147-6

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Nevin Manimala Statistics

Applying correlation analysis to electrode optimization in source domain

Med Biol Eng Comput. 2023 Jan 31. doi: 10.1007/s11517-023-02770-w. Online ahead of print.

ABSTRACT

In brain computer interface-based neurorehabilitation system, a large number of electrodes may increase the difficulty of signal acquisition and the time consumption of decoding algorithm for motor imagery EEG (MI-EEG). The traditional electrode optimization methods were limited by the low spatial resolution of scalp EEG. EEG source imaging (ESI) was further applied to reduce the number of electrodes, in which either the electrodes covering activated cortical areas were selected, or the reconstructed electrodes of EEGs with higher Fisher scores were retained. However, the activated dipoles do not all contribute equally to decoding, and the Fisher score cannot represent the correlations between electrodes and dipoles. In this paper, based on ESI and correlation analysis, a novel electrode optimization method, denoted ECCEO, was developed. The scalp MI-EEG was mapped to cortical regions by ESI, and the dipoles with larger amplitudes were chosen to designate a region of interest (ROI). Then, Pearson correlation coefficients between each dipole of the ROI and the corresponding electrode were calculated, averaged, and ranked to obtain two average correlation coefficient sequences. A small but important group of electrodes for each class were alternately added to the predetermined basic electrode set to form a candidate electrode set. Their features were extracted and evaluated to determine the optimal electrode set. Experiments were conducted on two public datasets, the average decoding accuracies achieved 95.99% and 88.30%, and the reduction of computational cost were 65% and 56%, respectively; statistical significance was examined as well.

PMID:36719563 | DOI:10.1007/s11517-023-02770-w