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Nevin Manimala Statistics

Source-oriented ecological and resistome risks associated with geochemical enrichment of heavy metals in river sediments

Chemosphere. 2023 Jun 9:139119. doi: 10.1016/j.chemosphere.2023.139119. Online ahead of print.

ABSTRACT

Heavy metals (HMs) pose ecological and resistome risks to aquatic systems. To efficiently develop targeted risk mitigation strategies, apportioning HM sources and assessing their source-oriented risks are essential. Although many studies have reported risk assessment and source apportionment of HMs, yet few have explored source-specific ecological and resistome risks associated with geochemical enrichment of HMs in aquatic environments. Therefore, this study proposes an integrated technological framework to characterize source-oriented ecological and resistome risks in the sediments of a plain river in China. Several geochemical tools quantitatively showed Cd and Hg had the highest pollution levels in the environment, with 19.7 and 7.5 times higher than their background values, respectively. Positive matrix factorization (PMF) and Unmix were comparatively used to apportion sources of HMs. Essentially, the two models were complementary and identified similar sources including industrial discharges, agricultural activities, atmospheric deposition and natural background, with contributions of 32.3-37.0%, 8.0-9.0%, 12.1-15.9% and 42.8-43.0%, respectively. To analyze source-specific ecological risks, the apportionment results were integratively incorporated into a modified ecological risk index. The results showed anthropogenic sources were the most significant contributors to the ecological risks. Particularly, industrial discharges majorly contributed high- (44%) and extremely high (52%) ecological risk for Cd, while agricultural activities posed a greater percentage of considerable-(36%) and high- (46%) ecological risk for Hg. Furthermore, the high-throughput sequencing metagenomic analysis identified abundant and diverse antibiotic resistance genes (ARGs), including some carbapenem-resistance genes and emerging genes such as mcr-type in the river sediments. Network and statistical analyses displayed significant correlations between ARGs and geochemical enrichment of HMs (ρ > 0.8; P-value <0.01), indicating their important impacts on resistome risks in the environment. This study provides useful insights into risk prevention and pollution control of HMs, and the framework can be made applicable to other rivers facing environmental challenges worldwide.

PMID:37302501 | DOI:10.1016/j.chemosphere.2023.139119

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Nevin Manimala Statistics

Appraise potassium chemistry and distribution patterns in tailing soil, India: Through quantity – Intensity relations and multi model statistical methods

Chemosphere. 2023 Jun 9:139184. doi: 10.1016/j.chemosphere.2023.139184. Online ahead of print.

ABSTRACT

Tailings are waste materials left behind after mineral extraction. Giridih district of Jharkhand, India has the second largest ore of mica mines in the country. This study evaluated the forms of potassium (K+) and quantity-intensity relationships in soils contaminated by tailings around the abundant mica mines. A total of 63 rice rhizosphere soil samples (8-10 cm depth) were collected from agricultural fields near 21 mica mines in the Giridih district at different distances: 10 m (zone 1), 50 m (zone 2), and 100 m (zone 3). The samples were collected to quantify various forms of potassium in the soil and characterize non-exchangeable K (NEK) reserves and Q/I isotherms. The semi-logarithmic release of NEK with continuous extractions suggests a decrease in release over time. Significant values of threshold K+ levels were observed in zone 1 samples. As K+ concentrations increased, the activity ratio (AReK) and its corresponding labile K+ (KL) concentrations decreased. The AReK, KL, and fixed K+ (KX) values were higher in zone 1 [AReK: 3.2 (mol L-1)1/2 × 10-4, KL: 0.058 cmol kg-1, and KX: 0.038 cmol kg-1), except for readily available K+ (K0) for zone 2 (0.028 cmol kg-1). The potential buffering capacity and K+ potential values were higher in zone 2 soils. In zone 1, Vanselow selectivity coefficients (KV) and Krishnamoorthy-Davis-Overstreet selectivity coefficients (KKDO) were higher, while Gapon constants were higher in zone 3. It was found that AReK was significantly correlated with K0, KL, K+ saturation, -ΔG, KV, and KKDO. Different statistical methods such as positive matrix factorization, self-organizing maps, geostatistics, and Monte Carlo simulation approaches were employed to predict soil K+ enrichment, source apportionment, distribution patterns, availability for plants, and contribution to soil K+ maintenance. Thus, this study significantly contributes to understanding K+ dynamics in mica mine soils and operational K+ management.

PMID:37302492 | DOI:10.1016/j.chemosphere.2023.139184

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Nevin Manimala Statistics

Sonidegib as a Locally Advanced Basal Cell Carcinoma Therapy in Real-life Clinical Setting: A National Multicentre Study

Actas Dermosifiliogr. 2023 Jun 9:S0001-7310(23)00482-9. doi: 10.1016/j.ad.2023.06.011. Online ahead of print.

ABSTRACT

BACKGROUND: Basal cell carcinoma (BCC) is the most prevalent cancer. A minority of BCCs have an aggressive behaviour (laBCC) and may require hedgehog pathway inhibitors such as sonidegib as its treatment.

OBJECTIVE: To describe the use of sonidegib in a large number of patients and provide more data on its real-life efficacy and safety profile.

METHODS: We conducted a retrospective and multicentric study that included patients treated with sonidegib. Epidemiological, effectiveness and safety data were collected.

RESULTS: A total of 82 patients with a mean age of 73.9 years were included. Ten patients had Gorlin syndrome. Median treatment duration was 6 months. Median follow-up duration was 34.2 months. Globally, 81.7% of the patients showed clinical improvement (52.4% partial response and 29.3% complete response), 12.2% clinical stability and 6.1% disease progression. There was no statistically significant difference in clinical improvement between the 24 h and 48 h sonidegib posology. After 6 months of treatment, 48.8% of the patients discontinued sonidegib. Prior vismodegib treatment and recurrent primary BCC were associated with a poorer response to sonidegib. At 6 months of treatment, 68.3% of the patients experienced at least one adverse effect.

CONCLUSION: Sonidegib shows good effectiveness and acceptable safety profile in usual clinical practice.

PMID:37302483 | DOI:10.1016/j.ad.2023.06.011

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Nevin Manimala Statistics

Artificial selection of communities drives the emergence of structured interactions

J Theor Biol. 2023 Jun 9:111557. doi: 10.1016/j.jtbi.2023.111557. Online ahead of print.

ABSTRACT

Species-rich communities, such as the microbiota or microbial ecosystems, provide key functions for human health and climatic resilience. Increasing effort is being dedicated to design experimental protocols for selecting community-level functions of interest. These experiments typically involve selection acting on populations of communities, each of which is composed of multiple species. If numerical simulations started to explore the evolutionary dynamics of this complex, multi-scale system, a comprehensive theoretical understanding of the process of artificial selection of communities is still lacking. Here, we propose a general model for the evolutionary dynamics of communities composed of a large number of interacting species, described by disordered generalised Lotka-Volterra equations. Our analytical and numerical results reveal that selection for scalar community functions leads to the emergence, along an evolutionary trajectory, of a low-dimensional structure in an initially featureless interaction matrix. Such structure reflects the combination of the properties of the ancestral community and of the selective pressure. Our analysis determines how the speed of adaptation scales with the system parameters and the abundance distribution of the evolved communities. Artificial selection for larger total abundance is thus shown to drive increased levels of mutualism and interaction diversity. Inference of the interaction matrix is proposed as a method to assess the emergence of structured interactions from experimentally accessible measures.

PMID:37302465 | DOI:10.1016/j.jtbi.2023.111557

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Nevin Manimala Statistics

Interaction of metabolism-related pathway gene variants with bisphenol A exposure on serum lipid profiles

Environ Toxicol Pharmacol. 2023 Jun 9:104173. doi: 10.1016/j.etap.2023.104173. Online ahead of print.

ABSTRACT

Bisphenol A (BPA) can be metabolized by metabolic enzymes and may induce abnormal lipid metabolism. We hypothesized that BPA exposure and its interaction with metabolism-related genes might be associated with serum lipid profiles. We performed a two-stage study among 955 middle-aged and elderly participants in Wuhan, China. Urinary BPA level was estimated without (BPA, μg/L) or with (BPA/Cr, μg/g) adjustments for urinary creatinine and ln-transformed values (ln-BPA or ln-BPA/Cr) were used to normalize the asymmetrical distributions. A total of 412 metabolism-related gene variants were selected and used for gene-BPA interaction analysis. Multiple linear regression was used to analyze the interactions between BPA exposure and metabolism-related genes on serum lipid profiles. In the discovery stage, both ln-BPA and ln-BPA/Cr was associated with decreased high-density lipoprotein cholesterol (HDL-C). Gene-urinary BPA interaction for IGFBP7 rs9992658 was observed to associate with HDL-C levels in both discovery and validation stages, with Pinteraction equal to 9.87×10-4 (ln-BPA) and 1.22×10-3 (ln-BPA/Cr) in combined analyses. In addition, the inverse association of urinary BPA with HDL-C levels was only observed among individuals carrying rs9992658 AA genotype, but not in individuals carrying rs9992658 AC or CC genotypes. The interaction between BPA exposure and metabolism-related gene IGFBP7 (rs9992658) was associated with HDL-C levels. AVAILABILITY OF DATA AND MATERIAL: Not applicable.

PMID:37302441 | DOI:10.1016/j.etap.2023.104173

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Nevin Manimala Statistics

Fetal Echocardiographic Z-Score Pilot Project: Study Design and Impact of Gestational Age and Variable Type on Reproducibility of Measurements Within and Across Investigators

J Am Soc Echocardiogr. 2023 Jun 9:S0894-7317(23)00300-0. doi: 10.1016/j.echo.2023.05.010. Online ahead of print.

ABSTRACT

BACKGROUND: Fetal echocardiography is widely available but normative data are not robust. In this pilot study, we evaluated 1) the feasibility of pre-specified measurements in a normal fetal echocardiogram to inform study design and 2) measurement variability to assign thresholds of clinical significance and guide analyses in larger fetal echocardiography Z-score initiatives.

METHODS: Images from pre-defined gestational age groups (16-20 weeks; >20-24 weeks; >24-28 weeks; and >28-32 weeks) were retrospectively analyzed. Fetal echocardiography expert raters attended online group training then independently analyzed 73 fetal studies (18 per age group) in a fully crossed design of 53 variables; each observer repeated measures for 12 fetuses. Kruskal-Wallis tests were used to compare measurements across centers and age groups. Coefficients of variation (CoV) were calculated at the subject level for each measurement as the ratio of standard deviation (SD) to mean. Intraclass correlation coefficients (ICC) were used to show inter- and intrarater reliabilities. Cohen’s d>0.8 was used to define clinically important differences. Measurements were plotted against gestational age, biparietal diameter, and femur length.

RESULTS: Expert raters completed each set of measurements in a mean (SD) of 23(9) minutes per fetus. Missingness ranged from 0% to 29%. CoV was similar across age groups for all variables (P<0.05), except ductus arteriosus mean velocity and left ventricular ejection time which were both higher at older gestational age. CoV was >15% for right ventricular systolic and diastolic widths despite fair to good repeatability (ICC>0.5); ductal velocities and 2D measures, left ventricular short axis dimensions, and isovolumic times all had high CoV and high interobserver variability despite good to excellent intraobserver agreement (ICC>0.6). CoV did not improve when ratios (e.g. tricuspid:mitral annulus) were used instead of linear measurements. Overall, 27 variables had acceptable inter- and intraobserver repeatability, while 14 had excessive variability between readers despite good intraobserver agreement.

CONCLUSIONS: There is considerable variability in fetal echocardiographic quantification in clinical practice that may affect the design of multicenter fetal echocardiography Z-score studies, and not all measurements may be feasible for standard normalization. As missingness was substantial, a prospective design will be needed. Data from this pilot study may aid in the calculation of sample sizes and inform thresholds for distinguishing clinically significant from statistically significant effects.

PMID:37302438 | DOI:10.1016/j.echo.2023.05.010

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Nevin Manimala Statistics

Amplified gut feelings under inflammation and depressed mood: A randomized fMRI trial on interoceptive pain in healthy volunteers

Brain Behav Immun. 2023 Jun 9:S0889-1591(23)00147-2. doi: 10.1016/j.bbi.2023.06.005. Online ahead of print.

ABSTRACT

BACKGROUND: Inflammation and depressed mood constitute clinically relevant vulnerability factors for enhanced interoceptive sensitivity and chronic visceral pain, but their putative interaction remains untested in human mechanistic studies. We tested interaction effects of acute systemic inflammation and sad mood on the expectation and experience of visceral pain by combining experimental endotoxemia with a mood induction paradigm.

METHODS: The double-blind, placebo-controlled, balanced crossover fMRI-trial in N=39 healthy male and female volunteers involved 2 study days with either intravenous administration of low-dose lipopolysaccharide (LPS, 0.4ng/kg body weight; inflammation condition) or saline (placebo condition). On each study, day two scanning sessions were conducted in an experimentally induced negative (i.e., sad) and in a neutral mood state, accomplished in balanced order. As a model of visceral pain, rectal distensions were implemented, which were initially calibrated to be moderately painful. In all sessions, an identical series of visceral pain stimuli was accomplished, signaled by predictive visual conditioning cues to assess pain anticipation. We assessed neural activation during the expectation and experience of visceral pain, along with unpleasantness ratings in a condition combining an inflammatory state with sad mood and in control conditions. All statistical analyses were accomplished using sex as covariate.

RESULTS: LPS administration led to an acute systemic inflammatory response (inflammation X time interaction effects for TNF-α, IL-6, and sickness symptoms, all p<.001). The mood paradigm effectively induced distinct mood states (mood X time interaction, p<.001), with greater sadness in the negative mood conditions (both p<.001) but no difference between LPS and saline conditions. Significant main and interaction effects of inflammation and negative mood were observed for pain unpleasantness (all p<.05). During cued pain anticipation, a significant inflammation X mood interaction emerged for activation of the bilateral caudate nucleus and right hippocampus (all pFWE<.05). Main effects of both inflammation and mood were observed in multiple regions, including insula, midcingulate cortex, prefrontal gyri, and hippocampus for inflammation, and midcingulate, caudate, and thalamus for mood (all pFWE<0.05).

CONCLUSIONS: Results support an interplay of inflammation and sad mood on striatal and hippocampal circuitry engaged during visceral pain anticipation as well as on pain experience. This may reflect a nocebo mechanism, which may contribute to altered perception and interpretation of bodily signals. At the interface of affective neuroscience and the gut-brain axis, concurrent inflammation and negative mood may be vulnerability factors for chronic visceral pain.

PMID:37302437 | DOI:10.1016/j.bbi.2023.06.005

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Nevin Manimala Statistics

Remodeling dental anatomy vs sham therapy for chronic temporomandibular disorders. A placebo-controlled randomized clinical trial

Ann Anat. 2023 Jun 9:152117. doi: 10.1016/j.aanat.2023.152117. Online ahead of print.

ABSTRACT

BACKGROUND: Evidence regarding the etiology or effective treatments for chronic orofacial pain, the majority diagnosed as temporomandibular disorder (TMD), is limited.

PURPOSE: To investigate whether occlusal equilibration therapy (ET) and decreasing the (higher) angle of the lateral guidance on the nonworking-side leads to a reduction in chronic TMDs intensity.

METHODS: We conducted a randomized, explanatory, single blind with blinded assessment, placebo-controlled trial with strong protection against bias involving patients with chronic TMDs. Patients were randomly assigned to receive equilibration therapy or sham therapy. ET in this study consisted in minimal invasive occlusal remodeling to obtain balanced occlusion with reduction of the steeper angle of lateral mandibular movement with respect to the Frankfort plane. The primary outcome was the change in pain intensity score (on a 0 – 10 point scale, with 0 indicating no pain and 10 the worst possible pain) at month 6. Secondary outcomes include maximum unassisted mouth opening and psychological distress.

RESULTS: A total of 77 participants underwent randomization, 39 of whom received ET and 38 sham therapy. The trial was stopped early for efficacy, according to preestablished rules when 67 participants (n=34, n=33, respectively) had completed the analysis. At month 6, the mean unadjusted pain intensity score was 2.1 in the ET and 3.6 in the sham therapy group (adjusted mean difference, -1.54; 95% confidence interval [CI] -.5 to -2.6; P=0.004; ANCOVA model). The mean increase in maximum unassisted mouth opening (main secondary outcome) was significantly higher in the real therapy group (adjusted mean difference 3.1mm, 95% CI 0.5 to 5.7, p=0.02).

CONCLUSION: ET significantly reduced the intensity of facial pain associated with chronic TMDs and increased maximum unassisted mouth opening, as compared with sham therapy, over the course of 6 months. There were no serious adverse events. (Funded by the Instituto de Salud Carlos III from the Ministry of Science and Innovation of the Government of Spain and European Regional Development Fund, Grant nº PI11/02507; “una manera de hacer Europa”.

DATA AVAILABILITY: Data citation 1. Urbano Santana, José López-Cedrún, Urbano Santana-Mora, Maria Jesús Mora, Fernanda Lorenzo-Franco, Nicolás Carral-Roura, et al. Composite pictures from the two study groups of the MAP Trial. Figshare 2020. https://doi.org/10.6084/m9.figshare.13107953.v1 Data citation 2. Urbano Santana-Penin et al. Dryad Digital Repository 2022. MAP Trial raw data. https://doi.org/10.5061/dryad.zkh189370.

PMID:37302432 | DOI:10.1016/j.aanat.2023.152117

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Nevin Manimala Statistics

Corrigendum to “Impacts of exhaust gas cleaning systems (EGCS) discharge waters on planktonic biological indicators”

Mar Pollut Bull. 2023 Jun 9;193:115152. doi: 10.1016/j.marpolbul.2023.115152. Online ahead of print.

NO ABSTRACT

PMID:37302205 | DOI:10.1016/j.marpolbul.2023.115152

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Nevin Manimala Statistics

Linking repetitive negative thinking and insomnia symptoms: A longitudinal trait-state model

J Anxiety Disord. 2023 Jun 1;97:102732. doi: 10.1016/j.janxdis.2023.102732. Online ahead of print.

ABSTRACT

Sleep disturbance is highly debilitating, and an abundance of research suggests that repetitive negative thinking (i.e., rumination, worry) may contribute to the development and maintenance of maladaptive sleep patterns, such as insomnia symptoms. Although repetitive negative thinking is often conceptualized as a ‘trait’ risk factor for anxiety-related disorders, it is unclear if it consists of time-varying (TV) or state-like features versus time-invariant (TI) or trait-like characteristics. Furthermore, it is unclear if it is the TV or TI components of repetitive negative thinking that contribute to insomnia symptoms that is commonly observed in anxiety-related disorders. In a 6-wave, 5-month longitudinal study, community participants (N = 1219) completed measures of rumination, worry, transdiagnostic repetitive negative thinking, and insomnia symptoms. A latent variable (trait-state-occasion) model was applied to the measures of repetitive negative thinking. The results showed that although estimates of TI factor variance and TV factor variance were both significant for latent repetitive negative thinking, worry, and rumination, the proportion of TI factor variance (0.82-0.89) was greater than the amount of TV factor variance (0.11-0.19). Although TV factor stability was statistically significant for latent repetitive negative thinking, rumination, and worry, the magnitude of the coefficients was small. Furthermore, regression weights for the latent repetitive negative thinking, rumination, and worry TI factor were significant and larger than those for the TV factor in predicting insomnia symptoms at each of the six time points. These findings suggest that repetitive negative thinking is largely TI, and it is this TI component that contributes to insomnia symptoms. Implications for conceptualizations of repetitive negative thinking as a predisposing and perpetuating factor in insomnia for anxiety and related disorders are discussed.

PMID:37302163 | DOI:10.1016/j.janxdis.2023.102732