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Nevin Manimala Statistics

Two 11-Years Periods Statistics and Trends of Enucleation and Evisceration

J Craniofac Surg. 2021 May 19. doi: 10.1097/SCS.0000000000007727. Online ahead of print.

ABSTRACT

PURPOSE: The indications for evisceration and enucleation are still evolving and controversial. The study aims to describe trends of enucleation versus evisceration in one center.

METHODS: In period 1998-2019 were 353 patients were included in the study. Statistical results and Chi-square test for pair-wise comparisons for the statistical significance in comparing two subgroups (years periods 1998-2008 and 2009-2019) per category have been evaluated.

RESULTS: The enucleation was performed in 306 patients, and the evisceration was performed in 47 patients. In 221 patients with the tumor exclusively enucleation was indicated. For the operation technique, the authors got a chi-square value of 0.027, and the associated P value is at 0.8695, then the number of evisceration and enucleation in subgroups have not confirmed independency. For the tumor presence, the authors got a chi-square value of 5.4, and the associated P value is at 0.02, then the number of validated/nonvalidated tumor presence in subgroups confirmed independency.

CONCLUSIONS: The performed enucleations had 98% cases uveal melanoma, 1% of cases of another type of malignancy (lymphoma non-Hodgkin type), and 1% cases with benign tumor. Enucleation is also today most frequently due to malignant intraocular tumors, whereas evisceration if most frequently for the phthisis eye after a trauma or a previous intraocular surgery. In our study in 22 years interval also in the second period, there was an increased trend of enucleation due to intraocular malignancy. It can have many reasons, especially, that patients are sent to oncology centers late in the advanced stage of tumor.

PMID:34015800 | DOI:10.1097/SCS.0000000000007727

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Nevin Manimala Statistics

Development of stratified normative data and reference equations for the timed up and down stairs test for healthy children 6-14 years of age

Physiotherapy. 2021 Mar 6;112:31-40. doi: 10.1016/j.physio.2021.03.002. Online ahead of print.

ABSTRACT

OBJECTIVES: To generate normative data on healthy children aged 6-14 years for the timed up and down stairs (TUDS) test, and to provide reference equations.

DESIGN AND SETTING: Cross-sectional study at two primary schools.

PARTICIPANTS: Healthy children 6-14 years of age.

MAIN OUTCOMES MEASURES: Anthropometric data and Minnesota Leisure-Time Physical Activity Questionnaire from children were collected before the start of the TUDS test. Heart rate, blood pressure and perceived exertion were measured at the beginning and at the end of the test. Two trials of the TUDS test were performed with 15-minute of rest on the same day and the better of the two trials was used in the analyses. The reference equations were established using the anthropometric variables as possible predictors of the TUDS test.

RESULTS: Two hundred fifty eight children (125 boys and 133 girls) were assessed. The mean TUDS test score decreased significantly from 6 to 14 years of age in boys and girls alike, with statistically significant differences between the three age range groups. A significant difference was found between girls and boys in TUDS test score. The 56% of the variation in TUDS test score could be explained by age, height, and weight in boys [TUDSsec score=(9.967-(0.182×Ageyears)+(0.025×Weightkg)-(2.546×Heightm)], while 50% could be explained in girls [TUDSsec score=10.553-(0.194×Ageyears)+(0.019×Weightkg)-(2.406×Heightm)]. The inclusion of physical level activity increased the variability explained (boys: 59%; girls: 51%).

CONCLUSIONS: TUDS score improved as the age of the children increased, with boys achieving better values than girls within each age group. TUDS test score can be easily predicted from age, height, and weight. The inclusion of the child’s physical activity level increased the variance explained by the equation.

PMID:34015718 | DOI:10.1016/j.physio.2021.03.002

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Nevin Manimala Statistics

Comparison of CT image quality between the AIDR 3D and FIRST iterative reconstruction algorithms: an assessment based on phantom measurements and clinical images

Phys Med Biol. 2021 May 20. doi: 10.1088/1361-6560/ac0391. Online ahead of print.

ABSTRACT

Modern CT iterative reconstruction algorithms are transitioning from a statistical-based to model-based approach. However, increasing complexity does not ensure improved image quality for all indications, and thorough characterization of new algorithms is important to understand their potential clinical impacts. This study performs both quantitative and qualitative analyses of image quality to compare Canon’s statistical-based Adaptive Iterative Dose Reduction 3D (AIDR 3D) algorithm to its model-based algorithm, Forward Projected Model-based Iterative Reconstruction Solution (FIRST). A phantom was used to measure the task-specific modulation transfer function (MTFTask), the noise power spectrum (NPS), and the low-contrast object-specific CNR (CNRLO) for each algorithm using three dose levels and the convolution algorithm (kernel) appropriate for abdomen, lung, and brain imaging. Additionally, MTFTaskwas measured at four contrast levels, and CNRLOwas measured for two object sizes. Lastly, three radiologists participated in a preference study to compare clinical image quality for three study types: non-contrast abdomen, pulmonary embolism, and lung screening. Nine questions related to the appearance of anatomical features or image quality characteristics were scored for twenty exams of each type. The behavior of both algorithms depended strongly on the kernel selected. Phantom measurements suggest that FIRST should be beneficial over AIDR 3D for abdomen imaging, but do not suggest a clear overall benefit to FIRST for lung or brain imaging; metrics suggest performance may be equivalent to or slightly favor AIDR 3D, depending on the size of the object being imaged and whether spatial resolution or low-contrast resolution is more important for the task at hand. Overall, radiologists strongly preferred AIDR 3D for lung screening, slightly preferred AIDR 3D for non-contrast abdomen, and had no preference for pulmonary embolism. FIRST was superior for the reduction of metal artifacts. Radiologist preference may be influenced by changes to noise texture.

PMID:34015770 | DOI:10.1088/1361-6560/ac0391

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Nevin Manimala Statistics

Fractional charge and fractional statistics in the quantum hall effects

Rep Prog Phys. 2021 May 20. doi: 10.1088/1361-6633/ac03aa. Online ahead of print.

ABSTRACT

Quasiparticles with fractional charge and fractional statistics are key features of the fractional quantum Hall effect. We discuss in detail the definitions of fractional charge and statistics and the ways in which these properties may be observed. In addition to theoretical foundations, we review the present status of the experiments in the area. We also discuss the notions of non-Abelian statistics and attempts to find experimental evidence for the existence of non-Abelian quasiparticles in certain quantum Hall systems.

PMID:34015771 | DOI:10.1088/1361-6633/ac03aa

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Nevin Manimala Statistics

Wastewater treatment plants as a reservoir of integrase and antibiotic resistance genes – An epidemiological threat to workers and environment

Environ Int. 2021 May 17;156:106641. doi: 10.1016/j.envint.2021.106641. Online ahead of print.

ABSTRACT

Conventional mechanical and biological wastewater treatment is unable to completely eliminate all pollutants, which can therefore enter surface water bodies together with treated wastewater. In addition, bioaerosols produced during wastewater treatment can pose a threat to the health of the wastewater treatment plant staff. In order to control the impact of a wastewater treatment plant (WWTP) on the surrounding environment, including its employees, samples of wastewater and water from a river which received treated wastewater were analysed in terms of their content of antibiotics and heavy metals, levels of selected physiochemical parameters, concentrations of antibiotic-resistance genes (ARGs) and genes of integrases. Furthermore, a quantitative analysis of ARGs in the metagenomic DNA from nasal and throat swabs collected from the WWPT employees was made. Both untreated and treated wastewater samples were dominated by genes of resistance to sulphonamides (sul1, sul2), MLS group of drugs (ermF, ermB) and beta-lactams (blaOXA). A significant increase in the quantities of ARGs and concentrations of antibiotics was observed in the river following the discharge of treated wastewater in comparison to their amounts in the river water upstream from the point of discharge. Moreover, a higher concentration of ARGs was detected in the DNA from swabs obtained from the wastewater treatment plant employees than from ones collected from the control group. Many statistically significant (p < 0.05) correlations between the concentration of the gene of resistance to heavy metals cnrA versus ARGs, and between the ARGs content and the concentrations of heavy metals in both wastewater and river water samples were observed. The study has demonstrated that the mechanical and biological methods of wastewater treatment are not efficient and may affect the transmission of hazardous pollutants to the aquatic environment and to the atmospheric air. It has been shown that an activated sludge bioreactor can be a potential source of the presence of multi-drug resistant microorganisms in the air, which is a health risk to persons working in WWTPs. It has also been found that an environment polluted with heavy metals is where co-selection of antibiotic resistance may occur, in the development of which integrase genes play an essential role.

PMID:34015664 | DOI:10.1016/j.envint.2021.106641

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Nevin Manimala Statistics

Prenatal exposure to organophosphate esters and neonatal thyroid-stimulating hormone levels: A birth cohort study in Wuhan, China

Environ Int. 2021 May 17;156:106640. doi: 10.1016/j.envint.2021.106640. Online ahead of print.

ABSTRACT

BACKGROUND: Increasing animal studies have indicated that organophosphate esters (OPEs) have endocrine-disruptive potential. However, human epidemiological evidence is limited, especially in susceptible populations, such as pregnant women and neonates. The purpose of this present study was to examine the trimester-specific relationships of prenatal exposure to OPEs with neonatal thyroid-stimulating hormone (TSH).

METHOD: A total of 102 mother-newborn pairs were recruited from a birth cohort study between April 2015 and September 2016 in Wuhan, China. Eight OPE metabolites were detectable in urine samples from pregnant women across the different three trimesters. Neonatal TSH levels were measured using time-resolved immunofluorescence assay. The associations between maternal urinary OPE metabolites and neonatal TSH and the critical exposure windows of fetal vulnerability were estimated using multiple informant models.

RESULTS: Seven OPE metabolites with detection frequency > 50% (52.9%-98.0%) were detected in repeated urine samples from different three trimesters, and the urinary OPE metabolites across pregnancy was of high variability (ICCs: 0.09-0.26). After adjusted for confounders (e.g., maternal age, prepregnancy BMI, passive smoking during pregnancy), some suggestive associations were observed between maternal urinary OPE metabolites and neonatal TSH in different trimesters. A doubling of second trimester di-o-cresyl phosphate & di-p-cresyl phosphate (DoCP & DpCP) was associated with a 7.82% increase in neonatal TSH level (95% CI: -0.70%, 17.06%, p-value = 0.07), a doubling of third trimester diphenyl phosphate (DPHP) was associated with a 4.71% decrease in neonatal TSH level (95% CI: -9.80%, 0.67%, p-value = 0.09), and a doubling of third trimester bis(2-butoxyethyl) phosphate (BBOEP) was associated with a 6.38% increase in neonatal TSH level (95% CI: -0.12%, 13.31%, p = 0.05). However, such associations did not differ materially across trimesters. When performing stratified analysis by infant sex, the associations were statistically significant and were sex-dependent.In females, maternal urinary DoCP & DpCP concentrations in each trimester were associated with increased neonatal TSH levels, and urinary DPHP concentration in the third trimester was associated with decreased neonatal TSH level. In males, maternal urinary BBOEP concentration in the first trimester was positively related to neonatal TSH level.

CONCLUSION: This prospective study demonstrated that prenatal exposure to OPEs can lead to a sex-dependent change in neonatal TSH levels. Although the sex-selective effect was differed among various urinary OPE metabolites, more evidence was supported that OPE exposure was related to increased TSH levels for both males and females.

PMID:34015666 | DOI:10.1016/j.envint.2021.106640

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Nevin Manimala Statistics

Assessing redistribution of muscle innervation zones after spinal cord injuries

J Electromyogr Kinesiol. 2021 May 3;59:102550. doi: 10.1016/j.jelekin.2021.102550. Online ahead of print.

ABSTRACT

This study aimed to examine the redistribution of neuromuscular junctions or innervation zones (IZs) after spinal cord injuries (SCI). Fifteen able-bodied subjects and 15 subjects with SCI (American Spinal Injury Association Impairment Scale A to D), participated in the study. Surface electromyography (EMG) signals were collected from the biceps brachii muscle by a customized linear electrode array when subjects generated maximal isometric voluntary contractions. The Radon transform was applied to detect the IZ locations in the multiple channel surface EMG signals which were differentiated between consecutive channels. The distribution of IZs was compared between the SCI and control groups using the student-t test. Statistical analysis disclosed a significantly wider range of IZs in the SCI group compared with the control group (SCI: 3.83 ± 1.32 IED, control: 2.83 ± 0. 87 IED, IED: inter-electrode distance, p < 0.05). No remarkable shifts of the center of the distribution were observed between the two groups (SCI: 9.23 ± 2.35 IED, control: 8.53 ± 2.33 IED, p = 0.42). Changes of IZ distribution in the paralyzed muscles could be associated with the complex neuromuscular reorganization after the SCI.

PMID:34015700 | DOI:10.1016/j.jelekin.2021.102550

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Nevin Manimala Statistics

Frequency of HLA alleles among COVID-19 infected patients: Preliminary data from Saudi Arabia

Virology. 2021 May 6;560:1-7. doi: 10.1016/j.virol.2021.04.011. Online ahead of print.

ABSTRACT

HLA polymorphism is one of the genetic factors that may be associated with variations in susceptibility to COVID-19 infection. In this study, the frequency of HLA alleles among Saudi patients infected with COVID-19 was examined. The association with infection susceptibility and mortality was evaluated. This study included 135 Saudi COVID-19-infected patients (106 recovered and 29 died) who were admitted to hospitals because of their symptoms, and 135 healthy controls. HLA class I (A, B, C) and class II (DRB1, DQB1) genotyping was performed using the molecular method (PCR-rSSO). In this study, there was a significant increase in the frequency of HLA-A*01, B*56 and C*01 among infected patients compared to the control group (12.1% vs. 5.2%, p = 0.004, 3.7% vs. 0%, p = 0.006, 4.4% vs. 1.5%, p = 0.042, respectively). Moreover, there was a significant increase in the frequency of HLA-A*03 and C*06 among fatal patients compared to infected patients (13.8% vs. 5.7%, p = 0.036, 32.8% vs. 17.5%, p = 0.011, respectively). In terms of HLA class II, HLA-DRB1*04 was significantly higher in the control group compared to infected patients (27.4% vs. 16.3%, p = 0.002), while HLA-DRB1*08 was significantly higher in the infected group compared to the control (4.8% vs. 0.7%, p = 0.004). After statistical correction of the p value, A*01, B*56, DRB1*04 and DRB1*08 remained statistically significant (pc = 0.04, pc = 0.03, pc = 0.014 and pc = 0.028). This initial data suggested that individual HLA genotypes might play a role in determining susceptibility to COVID-19 infection and infection outcome. However, examining a larger sample size from different populations is required to determine a powerful association for clinical application.

PMID:34015620 | DOI:10.1016/j.virol.2021.04.011

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Nevin Manimala Statistics

The association between previous induced abortion and in vitro fertilization outcomes: A retrospective cohort study in Hefei, China

Eur J Obstet Gynecol Reprod Biol. 2021 May 11;262:124-128. doi: 10.1016/j.ejogrb.2021.05.020. Online ahead of print.

ABSTRACT

OBJECTIVES: To assess the association between previous induced abortion and in vitro fertilization (IVF) outcomes among Chinese women.

STUDY DESIGN: In this retrospective cohort study, a total of 1436 infertility patients treated with IVF for the first time in the reproductive centre of Anhui Province Maternity and Child Health Hospital from February 2014 to April 2018 were selected as the study population, and 95 (6.6 %) had a history of induced abortion. Data were assessed from the hospital electronic database and medical records in the reproductive centre.

RESULTS: In total, 818 women (57.0 %) achieved clinical pregnancy, and 501 (34.9 %) achieved live birth. After adjustments for a series of potential confounding factors, women with a history of induced abortion had a significantly decreased probability of clinical pregnancy per transfer (OR: 0.71, 95 % CI: 0.53, 0.95, p = 0.037) and live birth per pregnancy (OR: 0.52, 95 % CI: 0.30, 0.90, p = 0.021) and a higher risk of miscarriage per pregnancy (OR: 1.89, 95 % CI: 1.24, 2.88, p = 0.009) than those without. Because relevant information was unavailable, the impacts of different types of previous induced abortion were not assessed.

CONCLUSIONS: Previous induced abortion may have an adverse effect on IVF outcomes among infertility patients.

PMID:34015639 | DOI:10.1016/j.ejogrb.2021.05.020

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Nevin Manimala Statistics

Genetically predicted selenium is negatively associated with serum TC, LDL-C and positively associated with HbA1C levels

J Trace Elem Med Biol. 2021 May 13;67:126785. doi: 10.1016/j.jtemb.2021.126785. Online ahead of print.

ABSTRACT

BACKGROUND & AIMS: Pervious epidemiological evidence on the associations of selenium, zinc with lipid profile and glycemic indices was contradictory. The aim of this study was to investigate whether selenium and zinc were casually associated with lipid profile and glycemic indices using mendelian randomization (MR) analysis.

METHOD: A two-sample MR was used to evaluate the causal-effect estimations. Summary statistics for selenium, zinc, lipids and glycemic indices were retrieved from previous large-scale genome-wide association study (GWAS). Single nucleotide polymorphisms (SNPs) that independently and strongly associated with the selenium and zinc were selected as the instrumental variables. The casual estimates were calculated using inverse variance weighted method (IVW), with weighted median, MR-Egger, and MR-PRESSO test as sensitivity analysis, respectively.

RESULTS: In the standard IVW analysis, per SD increment in selenium was associated with an 0.077 mmol/L decrease of TC (95 %CI: -0.102,-0.052) and 0.074 mmol/L of LDL-C (95 %CI: -0.1,-0.048). Suggestive casual associations were found between selenium and insulin or HbA1c. With IVW method, per SD increase in selenium was associated with an 0.023 mmol/L increase of insulin (95 %CI: 0.001,0.045), and an 0.013 mmol/L increase of HbA1c (95 %CI: 0.003,0.023). The results were robust in the sensitivity analysis. Zinc was not casually associated with any of lipid and glycemic markers.

CONCLUSION: Our MR analysis provides evidence of the potential causal effect of Se on beneficial lipid profile, including decreased TC and LDL-C. Furthermore, suggestive casual evidence was suggested between Se and increased serum HbA1c levels. Careful consideration is required for the protective effects of Se supplementation. No casual-effect association was found between Zn and any indices of the lipid and glucose parameters.

PMID:34015661 | DOI:10.1016/j.jtemb.2021.126785