Category: Statistics

PLoS One. 2022 May 24;17(5):e0264210. doi: 10.1371/journal.pone.0264210. eCollection 2022.

ABSTRACT

The development of robust nutrient management strategies have played a crucial role in improving crop productivity, profitability and nutrient use efficiency. Therefore, the implementation of efficient nutrient management stratigies is important for food security and environmental safety. Amongst the essential plant nutrients, managing nitrogen (N) and potassium (K) in wheat (Triticum aestivum L.) based production systems is citically important to maximize profitable production with minimal negative environmental impacts. We investigated the effects of different fertilizer-N (viz. 0-240 kg N ha-1; N0-N240) and fertilizer-K (viz. 0-90 kg K ha-1; K0-K90) application rates on wheat productivity, nutrient (N and K) use efficiency viz. partial factor productivity (PFPN/K), agronomic efficiency (AEN/K), physiological efficiency (PEN/K), reciprocal internal use efficiency (RIUEN/K), and profitability in terms of benefit-cost (B-C) ratio, gross returns above fertilizer cost (GRAFC) and the returns on investment (ROI) on fertilizer application. These results revealed that wheat productivity, plant growth and yield attributes, nutrients uptake and use efficiency increased significantly (p<0.05)with fertilizer-N application, although the interaction effect of N x K application was statistically non-significant (p<0.05). Fertilizer-N application at 120 kg N ha-1 (N120) increased the number of effective tillers (8.7%), grain yield (17.3%), straw yield (15.1%), total N uptake (25.1%) and total K uptake (16.1%) than the N80. Fertilizer-N application significantly increased the SPAD reading by ~4.2-10.6% with fertilizer-N application (N80-N240), compared with N0. The PFPN and PFPK increased significantly with fertilizer-N and K application in wheat. The AEN varied between 12.3 and 22.2 kg kg-1 with significantly higher value of 20.8 kg kg-1 in N120. Fertilizer-N application at higher rate (N160) significantly decreased the AEN by ~16.3% over N120. The N120treatment increased the AEK by ~52.6% than N80 treatment. Similarly the RIUEN varied between 10.6 and 25.6 kg Mg-1 grain yield, and increased significantly by ~80.2% with N120 as compared to N0 treatment. The RIUEK varied between 109 and 15.1 kg Mg-1 grain yield, and was significantly higher in N120 treatment. The significant increase in mean gross returns (MGRs) by ~17.3% and mean net returns (MNRs) by ~24.1% increased the B-C ratio by ~15.1% with N120 than the N80 treatment. Fertilizer-N application in N120 treatment increased the economic efficiency of wheat by ~24.1% and GRAFC by ~16.9%. Grain yield was significantly correlated with total N uptake (r = 0.932**, p<0.01), K uptake (r = 0.851**), SPAD value (r = 0.945**), green seeker reading (r = 0.956**), and the RIUEN (r = 0.910**). The artificial neural networks (ANNs) showed highly satisfactory performance in training and simulation of testing data-set on wheat grain yield. The calculated mean absolute error (MAE), mean absolute percentage error (MAPE) and root mean square error (RMSE) for wheat were 0.0087, 0.834 and 0.052, respectively. The well trained ANNs model was capable of producing consistency for the training and testing correlation (R2 = 0.994**, p<0.01) between the predicted and actual values of wheat grain yield, which implies that ANN model succeeded in wheat grain yield prediction.

PMID:35609063 | DOI:10.1371/journal.pone.0264210

PLoS One. 2022 May 24;17(5):e0268971. doi: 10.1371/journal.pone.0268971. eCollection 2022.

ABSTRACT

BACKGROUND: Patient’s knowledge about dispensed medications is one of the major factors that determine the rational use of medicines.

OBJECTIVES: This study aimed to assess exit-knowledge of ambulatory patients about their dispensed medications and associated factors at the outpatient pharmacy of Mizan-Tepi University Teaching Hospital, Southwest Ethiopia.

METHODS: A hospital-based cross-sectional study design was conducted from August to October 2021. Study subjects were selected by random sampling technique and were interviewed using a structured interview questionnaire. Binary logistic regression was used to identify factors associated with exit knowledge. At a 95% confidence interval (CI), p≤0.05 was considered statistically significant.

RESULT: Of the total 400 participants, 116 (29.0%) participants had sufficient exit-knowledge about their dispensed medication. Patients with higher educational level had increased exit knowledge of dispensed medications than those with no formal education (AOR: 5.590; 95% CI 1.019-30.666). Also, the nature of illness as being chronic significantly enlarged the odds (AOR 5.807; 95% CI 2.965-11.372) of having sufficient exit-knowledge. Participants who reported, “I do not know” and “I did not get enough information from the pharmacist” had lower odds (AOR 0.374; 95% CI: 0.142-0.982) and (AOR 0.166; 95% CI 0.062-0.445) of sufficient exit-knowledge in comparison to those who responded “I got enough information from the pharmacist” respectively. Furthermore, the odd of sufficient exit-knowledge was 7.62 times higher in those who claimed prescribing doctor as the source of information.

CONCLUSION: The majority of patients had insufficient exit-knowledge about their dispensed medications. Educational status, nature of the disease, perceived sufficiency of pharmacist knowledge, and source of information were significantly associated with exit knowledge.

PMID:35609061 | DOI:10.1371/journal.pone.0268971

PLoS One. 2022 May 24;17(5):e0268564. doi: 10.1371/journal.pone.0268564. eCollection 2022.

ABSTRACT

BACKGROUND: Transforaminal percutaneous endoscopic lumbar discectomy (PELD) is a widely used basic technique for lumbar disc herniation (LDH) with advantages including causing less trauma and fast recovery. The secure, efficient, and rapid enlargement of the intervertebral foramen is a key step in PELD procedures. However, the conventional multi-step trephine system for foraminoplasty involves complicated surgical procedures. In this study, we reported an improved one-step foraminoplasty via a large trephine with simplified surgical procedures, reduced radiation exposure, and shortened operative time.

METHODS: 70 LDH patients who underwent PELD were retrospectively reviewed in this study. The conventional multi-step trephine system was used for foraminoplasty in 35 patients in the multi-step (MS) group, and the single large trephine was used in the other 35 patients in the one-step (OS) group. Indicators including the operative time, the time to establish the working cannula, intraoperative fluoroscopy times, the radiation dose, and postoperative complications were compared between the MS and OS group.

RESULTS: The operative time and the time to establish the working cannula in the OS group was significantly shorter than that in the MS group (P < 0.01); intraoperative fluoroscopy times and the radiation dose in the OS group were significantly smaller than those in the MS group (P < 0.01). There was no statistical difference in the incidence of postoperative complications between the two groups (P > 0.05). The postoperative VAS scores and ODI scores (2 days and 3 months after the surgery) were significantly lower than the preoperative scores in both groups (P < 0.01), and there was no statistical difference in VAS scores or ODI scores between the two groups at the same time points (P > 0.05).

CONCLUSIONS: The one-step foraminoplasty via a single large trephine is an optimized technique evolving from the conventional multi-step foraminoplasty, showing significant superiority in simplified operation, shorted operative time, and reduced radiation exposure.

PMID:35609055 | DOI:10.1371/journal.pone.0268564

PLoS One. 2022 May 24;17(5):e0266964. doi: 10.1371/journal.pone.0266964. eCollection 2022.

ABSTRACT

OBJECTIVE: To apply biclustering, a methodology originally developed for analysis of gene expression data, to simultaneously cluster observations and clinical features to explore candidate phenotypes of knee osteoarthritis (KOA) for the first time.

METHODS: Data from the baseline Osteoarthritis Initiative (OAI) visit were cleaned, transformed, and standardized as indicated (leaving 6461 knees with 86 features). Biclustering produced submatrices of the overall data matrix, representing similar observations across a subset of variables. Statistical validation was determined using the novel SigClust procedure. After identifying biclusters, relationships with key outcome measures were assessed, including progression of radiographic KOA, total knee arthroplasty, loss of joint space width, and worsening Western Ontario and McMaster Universities Osteoarthritis Index (WOMAC) scores, over 96 months of follow-up.

RESULTS: The final analytic set included 6461 knees from 3330 individuals (mean age 61 years, mean body mass index 28 kg/m2, 57% women and 86% White). We identified 6 mutually exclusive biclusters characterized by different feature profiles at baseline, particularly related to symptoms and function. Biclusters represented overall better (#1), similar (#2, 3, 6), and poorer (#4, 5) prognosis compared to the overall cohort of knees, respectively. In general, knees in biclusters #4 and 5 had more structural progression (based on Kellgren-Lawrence grade, total knee arthroplasty, and loss of joint space width) but tended to have an improvement in WOMAC pain scores over time. In contrast, knees in bicluster #1 had less incident and progressive KOA, fewer total knee arthroplasties, less loss of joint space width, and stable pain scores compared with the overall cohort.

SIGNIFICANCE: We identified six biclusters within the baseline OAI dataset which have varying relationships with key outcomes in KOA. Such biclusters represent potential phenotypes within the larger cohort and may suggest subgroups at greater or lesser risk of progression over time.

PMID:35609053 | DOI:10.1371/journal.pone.0266964

PLoS One. 2022 May 24;17(5):e0268898. doi: 10.1371/journal.pone.0268898. eCollection 2022.

ABSTRACT

INTRODUCTION: Complete and understandable information is vital for informed consent and this includes how and when potential participants can expect to receive trial results. Informing participants during informed consent about the sharing of trial results is important for addressing participants’ needs, ensuring adherence to regulatory guidance, and in fulfilling a moral obligation.

METHODS: Patient Information Leaflets (PILs) were collated from across the UK and Ireland. Trial characteristics and data on disseminating trial results was extracted. Analysis included descriptive statistics and a directed content analysis approach. The content analysis framework was informed by regulatory guidance on PIL content and existing research on dissemination of trial results. Results were analysed using descriptive statistics and presented as a narrative summary as appropriate.

RESULTS: 238 PILs from 178 trials were analysed. Of the 238 PILs, 74% (n = 176) provided information on sharing results with participants, 70% (n = 123) of which described passive methods of disseminating results that require active engagement from the trial participants, i.e., effort required by the participant to seek the results. The majority (90%) of PILs included more than one proposed mode of dissemination that largely targeted healthcare professionals rather than participants. Only 8% of PILs specified a time period for when results could be expected, 47% did not specify a time period (e.g. at end of trial), and 45% included no information on when trial results would be available.

CONCLUSION: This study found that majority of the PILs included did include some information about dissemination of trial results. However, modes of dissemination tended to target researchers and clinicians rather than participants and information on when results would be available was often lacking. The findings highlight the need for further research that includes stakeholder input to identify what information on results summaries participants need at the point of making a decision about trial participation.

PMID:35609047 | DOI:10.1371/journal.pone.0268898

PLoS One. 2022 May 24;17(5):e0267655. doi: 10.1371/journal.pone.0267655. eCollection 2022.

ABSTRACT

Hyperglycaemia is a major risk factor in critically ill patients leading to adverse outcomes and mortality in diabetic and non-diabetic patients. The target blood glucose remained controversial; this study aimed to contribute in assessing the practice of hyperglycaemia control in intensive care units of the Military Hospital. Furthermore, the study proposed a protocol for hyperglycaemia control based on findings. A hospital-based cross-sectional study assessed the awareness and practice towards hyperglycaemia management in a sample 83 healthcare staff selected through stratified random sampling technique. In addition, 55 patients were enrolled, through quota sampling, after excluding those with diabetic ketoacidosis, hyperosmolar-hyperglycaemic state and patients < 18 years. A self-administrated questionnaire enabled to collect data from health staff and patient data were extracted from the medical records. SPSS-23 was used to analyze the collected data. Chi-square and ANOVA tests assessed the association among variables, these tests were considered statistically significant when p ≤ 0.05. The training on hyperglycaemia control differed (p = 0.017) between doctors and nurses. The target glycaemic level (140-180 mg/dl) was known by 11.1% of the study participants. Neither the knowledge nor the practice of hyperglycaemia control methods differed among staff (p> 0.05). The use of sliding scale was prevalent (79.3%) across the ICUs (p = 0.002). 31.5% of the patients had received different glycaemic control methods, 11.8% were in the targeted blood glucose level. Sliding scale was the method used by doctors and nurses (71.4% and 81.6% respectively). Lack of awareness about hyperglycaemia management methods was prevalent among ICU healthcare staff. Use of obsolete methods was the common practice in the ICUS of the Military Hospital. Target blood glucose for patients were unmet. Development of a local protocol for glycaemic control in all ICUs is needed along with sustained training programs on hyperglycaemia control for ICU healthcare staff.

PMID:35609030 | DOI:10.1371/journal.pone.0267655

PLoS One. 2022 May 24;17(5):e0268096. doi: 10.1371/journal.pone.0268096. eCollection 2022.

ABSTRACT

BACKGROUND: High-quality general practice has been demonstrated to provide cost-effective, equitable health care and improve health outcomes. Yet there is currently not a set of agreed comprehensive indicators in Australia. We have developed 79 evidence-based indicators and their corresponding 129 measures of high-quality general practice. This study aims to achieve consensus on relevant and feasible indicators and measures for the Australian context.

METHODS: This Delphi consensus study, approved by WSU Human Research Ethics Committee, consists of three rounds of online survey with general practice experts including general practitioners, practice nurses and primary health network staff. The identified indicators and measures are grouped under an attribute framework aligned with the Quadruple Aim, and further grouped under structures, processes and outcomes according to the Donabedian framework. Participants will rate each indicator and measure for relevance and feasibility, and provide comments and recommendations of additional indicators or measures. In the last round, participants will also be asked their views on the implementation of a quality indicator tool. Each indicator and measure will require ≥70% agreement in both relevance and feasibility to achieve consensus. Aggregated ratings will be statistically analysed for response rates, level of agreement, medians, interquartile ranges and group rankings. Qualitative responses will be analysed thematically using a mixed inductive and deductive approach.

DISCUSSION: This protocol will add to the current knowledge of the translation of performance guidelines into quality practice across complex clinical settings and in a variety of different contexts in Australian general practice. The Delphi technique is appropriate to develop consensus between the diverse experts because of its ability to offer anonymity to other participants and minimise bias. Findings will contribute to the design of an assessment tool of high-quality general practice that would enable future primary health care reforms in Australia.

PMID:35609025 | DOI:10.1371/journal.pone.0268096

J Phys Chem B. 2022 May 24. doi: 10.1021/acs.jpcb.2c01927. Online ahead of print.

ABSTRACT

We present a model that explains variance in the thermodiffusion of hydrocarbon isomers in binary liquid mixtures. The model relies on material transport equations for binary nonisothermal liquid systems that were derived through a nonequilibrium thermodynamic approach in a previous work, coupled with one of two methods: (i) use of equilibrium chemical potentials for each component under conditions of constant pressure, derived using statistical mechanics or (ii) use of the temperature derivative of chemical potential expressed phenomenologically as molecular entropy. The model is evaluated using Soret coefficients (S_T) measured in binary solutions of heptane isomers in benzene. The statistical mechanic approach yields moderately acceptable agreement with experimental data. The phenomenological approach, which relies on both measured and calculated values of molecular entropy from the literature, yields values of S_T centered around the experimental data, with the scatter likely due to poor precision in the measured or calculated values of entropy. For the latter case, we identify several methods for calculating entropy that yield good agreement with experimental data.

PMID:35608999 | DOI:10.1021/acs.jpcb.2c01927

Appl Spectrosc. 2022 May 24:37028221092789. doi: 10.1177/00037028221092789. Online ahead of print.

ABSTRACT

Five species of bacteria including Escherichia coli, Mycobacterium smegmatis, Pseudomonas aeruginosa, Staphylococcus epidermidis, and Enterobacter cloacae were deposited from suspensions of various titers onto disposable nitrocellulose filter media for analysis by laser-induced breakdown spectroscopy (LIBS). Bacteria were concentrated and isolated in the center of the filter media during centrifugation using a simple and convenient sample preparation step. Summing all the single-shot LIBS spectra acquired from a given bacterial deposition provided perfectly sensitive and specific discrimination from sterile water control specimens in a partial least squares discriminant analysis (PLS-DA). Use of the single-shot spectra provided only a 0.87 and 0.72 sensitivity and specificity, respectively. To increase the statistical validity of chemometric analyses, a library of pseudodata was created by adding Gaussian noise to the measured intensity of every emission line in an averaged spectrum of each bacterium. The normally distributed pseudodata, consisting of 4995 spectra, were used to compare the performance of the PLS-DA with a discriminant function analysis (DFA) and an artificial neural network (ANN). For the highly similar bacterial data, no algorithm showed significantly superior performance, although the PLS-DA performed least accurately with a classification error of 0.21 compared to 0.16 and 0.17 for ANN and DFA, respectively. Single-shot LIBS spectra from all of the bacterial species were classified in a DFA model tested with a tenfold cross-validation. Classification errors ranging from 20% to 31% were measured due to repeatability limitations in the single-shot data.

PMID:35608993 | DOI:10.1177/00037028221092789

Ethn Health. 2022 May 24:1-24. doi: 10.1080/13557858.2022.2078482. Online ahead of print.

ABSTRACT

OBJECTIVES: Obesity and its sequelae are an increasing problem, disproportionally affecting Māori and Pacific peoples, secondary to multifactorial systemic causes, including the effects of colonisation and the impact of globalisation. There is limited synthesised evidence on interventions to address obesity in these populations. The objective of this review is to identify evaluated interventions for prevention and management of obesity amongst Māori and Pacific adults, assess the effectiveness of these interventions, and identify enablers and barriers to their uptake.

DESIGN: Systematic review of databases (Medline, PubMed, EMBASE, CINAHL, Scopus, CENTRAL), key non-indexed journals, and reference lists of included articles were searched from inception to June 2021. Eligibility criteria defined using a Population, Intervention, Control, Outcome format and study/publication characteristics. Quantitative and qualitative data were extracted and analysed using narrative syntheses. Study quality was assessed using modified GRADE approach.

RESULTS: From the 8190 articles identified, 21 were included, with 18 eligible for quantitative and five for qualitative analysis. The studies were heterogenous, with most graded as low quality. Some studies reported small but statistically significant improvements in weight and body mass index. Key enablers identified were social connection, making achievable sustainable lifestyle changes, culturally-centred interventions and incentives including money and enjoyment. Barriers to intervention uptake included difficulty in maintaining adherence to a programme due to intrinsic programme factors such as lack of social support and malfunctioning or lost equipment.

CONCLUSIONS: Normal weight trajectory is progressive increase over time. Modest weight loss or no weight gain after several years may have a positive outcome in lowering progression to diabetes, or improvement of glycaemic control in people with diabetes. We recommend urgent implementation of Māori and Pacific-led, culturally-tailored weight loss programmes that promote holistic, small and sustainable lifestyle changes delivered in socially appropriate contexts.

PMID:35608909 | DOI:10.1080/13557858.2022.2078482