Category: Statistics

J Pharm Biomed Anal. 2021 May 18;202:114147. doi: 10.1016/j.jpba.2021.114147. Online ahead of print.

ABSTRACT

Epidermal growth factor receptor tyrosine kinase inhibitor (EGFR-TKI) acquired resistance remains a major barrier in the clinical treatment of lung adenocarcinoma with epidermal growth factor receptor (EGFR) mutations. Despite extensive efforts, mechanism of acquired resistance has not yet been elucidated clearly. The subject of this study was to characterize the metabolic signatures relevant to acquired EGFR-TKI resistance in pleural effusion (PE), and identify potential biomarkers in PE of patients with acquired EGFR-TKI resistance. PE from EGFR-TKI untreated group (n = 30) and EGFR-TKI resistant group (n = 18) was analyzed using liquid chromatography-mass spectrometry (LCMS) based metabolomic. Multivariate statistical analysis revealed distinctive diff ;erences between the groups. A total of 34 significantly differential metabolites in PE were identified, among which, the acquired EGFR-TKI resistant group had higher levels of l-lysine, taurine, ornithine and citrulline, and lower levels of l-tryptophan, kynurenine, l-phenylalanine, l-leucine, N-formyl-l-methionine, 3-hydroxyphenylacetic acid and N-acetyl-d-phenylalanine in PE than that of the EGFR-TKI untreated group. These metabolites are mainly involved in six amino acid metabolic pathways. In addition, 3-hydroxyphenylacetic acid and N-acetyl-d-phenylalanine showed the highest AUC values of 0.934 and 0.929 in receiver operating characteristic analysis. Through LCMS metabolomics, our study identified potential biomarkers in PE, differentiating EGFR-TKI resistant patients from untreated patients, as well as the mechanisms underlying acquired EGFR-TKI resistance; thus, providing novel insights into acquired EGFR-TKI resistance.

PMID:34029974 | DOI:10.1016/j.jpba.2021.114147

Psychiatry Res. 2021 May 13;302:113991. doi: 10.1016/j.psychres.2021.113991. Online ahead of print.

ABSTRACT

Psychotic-like experiences (PLEs) are subclinical psychotic symptoms that occur outside the context of sleep or are unrelated to drug use. PLEs of varying severity are reportedly very common in adolescence. However, there are concerns about whether the structure of PLEs among adolescents is latently dimensional or categorical (“taxonic”). The current study investigates the latent structure of PLEs in 1,886 adolescents recruited from senior high schools in Ghana. Four multivariate taxometric procedures (MAMBAC, MAXEIG, l-Mode and MAXSLOPE) were applied to analyze the data. Across the taxometric procedures, there was evidence that a dimensional structure underpins positive PLEs, negative PLEs and a combination of positive and negative PLEs. The findings suggest that PLEs are distributed in the adolescent population at differing degrees/severity and that evidence of discontinuity between milder and more severe PLEs is non-existent. The findings highlight the importance of incorporating a dimensional assessment of PLEs into the existing categorical approach so that differences between people can been seen as quantitative variations along the PLEs continuum.

PMID:34029985 | DOI:10.1016/j.psychres.2021.113991

Phys Ther Sport. 2021 May 13;50:153-158. doi: 10.1016/j.ptsp.2021.05.004. Online ahead of print.

ABSTRACT

OBJECTIVE: The aim of this study was to evaluate the relationship between running performance goals and running-related injuries (RRIs).

DESIGN: Retrospective cross-sectional study.

SETTING: A total of 970 recreational runners filled in an online questionnaire to collect data on personal characteristics, their running activities, RRIs, and running goals.

PARTICIPANTS: 970 recreational runners, 1) without a running performance goal, who 2) trained to complete a certain distance, and who 3) trained to complete a certain distance and to participate in a specific running event.

MAIN OUTCOME MEASURES: RRI, defined as any physical complaint developed during running in the previous 12 months.

RESULTS: A statistically significant relationship was found between runners who trained for a specific running event and who also wanted to run a certain distance (OR 2.0, 95%CI 1.23-2.98) compared with runners without a running goal. (Hinder from a) Previous injury (OR 3.9, 95%CI 2.79-5.42), overweight (OR 1.6, 95%CI 1.10-2.21), and training for more than 22.5 h/year (OR 1.7, 95%CI 1.04-2.72 and OR 2.3, 95%CI 1.42-3.81) were also associated with RRIs.

CONCLUSION: Running to achieve running goals, specifically running to complete a certain distance and to participate in an event, is associated with the occurrence of an RRI.

PMID:34029987 | DOI:10.1016/j.ptsp.2021.05.004

Schizophr Res. 2021 May 21;232:98-106. doi: 10.1016/j.schres.2021.05.008. Online ahead of print.

ABSTRACT

Gray matter and cortical thickness reductions have been documented in individuals at clinical high-risk for psychosis and may be more pronounced in those who transition to psychosis. However, these findings rely on small samples and are inconsistent across studies. In this review and meta-analysis we aimed to investigate neuroanatomical correlates of clinical high-risk for psychosis and potential predictors of transition, using a novel meta-analytic method (Seed-based d Mapping with Permutation of Subject Images) and cortical mask, combining data from surface-based and voxel-based morphometry studies. Individuals at clinical high-risk for psychosis who later transitioned to psychosis were compared to those who did not and to controls, and included three statistical maps. Overall, individuals at clinical high-risk for psychosis did not differ from controls, however, within the clinical high-risk for psychosis group, transition to psychosis was associated with less cortical gray matter in the right temporal lobe (Hedges’ g = -0.377), anterior cingulate and paracingulate (Hedges’ g = -0.391). These findings have the potential to help refine prognostic and etiopathological research in early psychosis.

PMID:34029948 | DOI:10.1016/j.schres.2021.05.008

J Electromyogr Kinesiol. 2021 Apr 30;59:102554. doi: 10.1016/j.jelekin.2021.102554. Online ahead of print.

ABSTRACT

INTRODUCTION: Cervical extensor muscle (CEM) fatigue causes decrements in upper limb proprioceptive accuracy during constrained single-joint tasks. This study used a novel humeral rotation joint position sense (JPS) measurement device to compare JPS accuracy in participants who received acute CEM fatigue vs. non-fatigued controls.

METHODS: Participants had vision occluded and were passively guided into postures of internal humeral rotation from a baseline posture before and after a CEM fatigue or control protocol. Mixed model repeated measures ANOVAs were used to verify fatigue and compared absolute, constant, and variable JPS error between groups.

RESULTS: CEM fatigue was verified via pre-post reduction in CEM strength, and myoelectric indicators of fatigue. However, between-group comparisons of absolute, constant, and variable JPS error were not statistically significant, despite having large effect sizes.

DISCUSSION: Contrary to prevailing literature, unconstrained humeral rotation JPS did not appear to be affected by CEM fatigue in this study. However, between-group differences in JPS error were dwarfed by inter-trial variability, which likely arose due to the unconstrained nature of this task, conflating chances for a Type II error. Future research should perform a kinematic analysis of task constraints to highlight potential compensatory mechanisms obscuring significant findings in this otherwise robust effect.

PMID:34029973 | DOI:10.1016/j.jelekin.2021.102554

Evolution. 2021 May 24. doi: 10.1111/evo.14265. Online ahead of print.

ABSTRACT

Saccharomyces yeast grow through mitotic cell division, converting resources into biomass. When cells experience starvation, sporulation is initiated and meiosis produces haploid cells inside a protective ascus. The protected spore state does not acquire resources and is partially protected from desiccation, heat, and caustic chemicals. Because cells cannot both be protected and acquire resources simultaneously, committing to sporulation represents a trade-off between current and future reproduction. Recent work has suggested that passaging through insect guts selects for spore formation, as surviving insect ingestion represents a major way that yeasts are vectored to new food sources. We subjected replicate populations from five yeast strains to passaging through insects, and evolved control populations by pipette passaging. We assayed populations for their propensity to sporulate after resource depletion. We found that ancestral domesticated strains produced fewer spores, and all strains evolved increased spore production in response to passaging through flies, but domesticated strains responded less. Exposure to flies led to a more rapid shift to sporulation that was more extreme in wild-derived strains. Our results indicate that insect passaging selects for spore production and suggest that domestication led to genetic canalization of the response to cues in the environment and initiation of sporulation. This article is protected by copyright. All rights reserved.

PMID:34029382 | DOI:10.1111/evo.14265

Andrologia. 2021 May 24:e14125. doi: 10.1111/and.14125. Online ahead of print.

ABSTRACT

Recently, with the advancements in laser technology, Holmium laser enucleation of the prostate (HoLEP) and Thulium laser enucleation of the prostate (ThuLEP) have come to the fore in the surgical treatment of benign prostatic hyperplasia (BPH). We aimed to evaluate and compare the outcomes of HoLEP and ThuLEP in patients with >100 ml prostate volume. Patients who underwent HoLEP and ThuLEP between July 2017 and March 2020 were reviewed retrospectively. The patients were divided into two groups as HoLEP (Group 1, n = 121) and ThuLEP (Group 2, n = 104). Perioperative parameters, functional outcomes, continence status, intra and post-operative complications were compared between groups in the post-operative 1st and 6th month. No significant difference was found in terms of total laser energy (TLE), morcellation efficiency (ME), enucleated tissue weight (ETW), complication rates (CR) and continence status of patients between both groups (p > .05). In favour of ThuLEP group, there were statistically significant differences regarding total operation time (TOT), laser efficiency (LE), enucleation time (ET) and enucleation efficiency (EE) between groups (p ≤ .05). HoLEP and ThuLEP can be used safely and effectively in prostates larger than 100 ml.

PMID:34029399 | DOI:10.1111/and.14125

PLoS One. 2021 May 24;16(5):e0252141. doi: 10.1371/journal.pone.0252141. eCollection 2021.

ABSTRACT

OBJECTIVE: To identify suggestions for future research on spinal movement variability (SMV) in individuals with low back pain (LBP) by investigating (1) the methodologies and statistical tools used to assess SMV; (2) characteristics that influence the direction of change in SMV; (3) the methodological quality and potential biases in the published studies; and (4) strategies for optimizing SMV in LBP patients.

METHODS: We searched literature databases (CENTRAL, Medline, PubMed, Embase, and CINAHL) and comprehensively reviewed the relevant papers up to 5 May 2020. Eligibility criteria included studies investigating SMV in LBP subjects by measuring trunk angle using motion capture devices during voluntary repeated trunk movements in any plane. The Newcastle-Ottawa risk of bias tool was used for data quality assessment. Results were reported in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews.

RESULTS: Eighteen studies were included: 14 cross-sectional and 4 prospective studies. Seven linear and non-linear statistical tools were used. Common movement tasks included trunk forward bending and backward return, and object lifting. Study results on SMV changes associated with LBP were inconsistent. Two of the three interventional studies reported changes in SMV, one of which was a randomized controlled trial (RCT) involving neuromuscular exercise interventions. Many studies did not account for the potential risk of selection bias in the LBP population.

CONCLUSION: Designers of future studies should recognize that each of the two types of statistical tools assesses functionally different aspects of SMV. Future studies should also consider dividing participants into subgroups according to LBP characteristics, as three potential subgroups with different SMV characteristics were proposed in our study. Different task demands also produced different effects. We found preliminary evidence in a RCT that neuromuscular exercises could modify SMV, suggesting a rationale for well-designed RCTs involving neuromuscular exercise interventions in future studies.

PMID:34029347 | DOI:10.1371/journal.pone.0252141

PLoS One. 2021 May 24;16(5):e0251136. doi: 10.1371/journal.pone.0251136. eCollection 2021.

ABSTRACT

BACKGROUND: Seborrheic dermatitis (SD) is a chronic inflammatory skin disease with a multifactorial aetiology. Malassezia yeasts have been associated with the disease but the role of bacterial composition in SD has not been thoroughly investigated.

OBJECTIVES: To profile the bacterial microbiome of SD patients and compare this with the microbiome of individuals with no inflammatory skin disease (controls).

METHODS: This was a cross sectional study embedded in a population-based study. Skin swabs were taken from naso-labial fold from patients with seborrheic dermatitis (lesional skin: n = 22; non-lesional skin SD: n = 75) and controls (n = 465). Sample collection began in 2016 at the research facility and is still ongoing. Shannon and Chao1 α- diversity metrics were calculated per group. Associations between the microbiome composition of cases and controls was calculated using multivariate statistics (permANOVA) and univariate statistics.

RESULTS: We found an increased α-diversity between SD lesional cases versus controls (Shannon diversity: Kruskal-Wallis rank sum: Chi-squared: 19.06; global p-value = 7.7×10-5). Multivariate statistical analysis showed significant associations in microbiome composition when comparing lesional SD skin to controls (p-value = 0.03;R2 = 0.1%). Seven out of 13 amplicon sequence variants (ASVs) that were significantly different between controls and lesional cases were members of the genus Staphylococcus, most of which showed increased composition in lesional cases, and were closely related to S. capitis S. caprae and S. epidermidis.

CONCLUSION: Microbiome composition differs in patients with seborrheic dermatitis and individuals without diseases. Differences were mainly found in the genus Staphylococcus.

PMID:34029350 | DOI:10.1371/journal.pone.0251136

PLoS One. 2021 May 24;16(5):e0251970. doi: 10.1371/journal.pone.0251970. eCollection 2021.

ABSTRACT

Movement, positioning and coordination of player formations is a key aspect for the performance of teams within field-based sports. The increased availability of player tracking data has given rise to numerous studies that focus on the relationship between simple descriptive statistics surrounding team formation and performance. While these existing approaches have provided a high-level a view of team-based spatial formations, there is limited research on the nature of collective movement across players within teams and the establishment of stable collective states within game play. This study draws inspiration from the analysis of collective movement in nature, such as that observed within schools of fish and flocking birds, to explore the existence of collective states within the phases of play in soccer. Order parameters and metrics describing group motion and shape are derived from player movement tracks to uncover the nature of the team’s collective states and transitions. This represents a unique addition to the current body of work around the analysis of player movement in team sports. The results from this study demonstrate that sequences of ordered collective behaviours exist with relatively rapid transitions between highly aligned polar and un-ordered swarm behaviours (and vice-versa). Defensive phases of play have a higher proportion of ordered team movement than attacking phases, indicating that movements linked with attacking tactics, such as player dispersion to generate passing and shooting opportunities leads to lower overall collective order. Exploration within this study suggests that defensive tactics, such as reducing the depth or width to close passing opportunities, allows for higher team movement speeds and increased levels of collective order. This study provides a novel view of player movement by visualising the collective states present across the phases of play in football.

PMID:34029340 | DOI:10.1371/journal.pone.0251970