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Nevin Manimala Statistics

Quantitative Assessment of Mitochondrial Volumetric Transitions in Arabidopsis thaliana

Curr Protoc. 2025 Jun;5(6):e70156. doi: 10.1002/cpz1.70156.

ABSTRACT

Mitochondria in plants typically appear as discrete spherical or slightly tubular organelles, with their morphology and volume serving as indicators of metabolic state and dysfunction. Measuring changes in mitochondrial volume is relatively straightforward in organisms lacking plastids. However, in chlorophyll-rich tissues, such assessments often require purification protocols that may compromise accuracy. Here, we present protocols for the quantitative assessment of mitochondrial volume transitions in leaf mesophyll cells of Arabidopsis thaliana. The methods are simple and highly sensitive and offer a reliable approach for studying mitochondrial morphology transitions under both physiological and stress conditions. © 2025 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Leaf mesophyll treatment and mitochondrial imaging Basic Protocol 2: Leaf mesophyll mitochondrial volume assessment Basic Protocol 3: Mitochondrial volume statistics.

PMID:40464066 | DOI:10.1002/cpz1.70156

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Risk of Switch to Mania/Hypomania in Bipolar Depressive Patients Treated with Antidepressants: A Real-World Study

Health Data Sci. 2025 Jun 3;5:0209. doi: 10.34133/hds.0209. eCollection 2025.

ABSTRACT

Background: The use of antidepressants in the treatment of bipolar depression remains controversial due to concerns about their potential to induce mood polarity switches. This multinational observational study aims to examine the association between the use of antidepressants and the risk of hypomanic/manic switch among bipolar depressive patients. Methods: Four electronic health record databases (IQVIA Disease Analyzer Germany, IQVIA Disease Analyzer France, IQVIA US Hospital Charge Data Master, and Beijing Anding Hospital) and one administrative claims database (IQVIA US Open Claims) were analyzed, and the study period covered from January 2013 until December 2017. Treatment patterns of patients with bipolar depression were collected. The hazard ratio (HR) was calculated by comparing the incidence of hypomanic/manic switch in patients who received antidepressants (AD group) with that in those who did not receive any antidepressant (non-AD group) in 730 days after the date of the first diagnosis of bipolar depression. Results: The analysis included a total of 122,843 patients from the 5 databases; 60.6% of them received antidepressants for bipolar depression. Across the 5 data sources, the mean age at index date ranged from 37.50 (15.72) to 52.10 (16.22) years. After controlling potential confounders by propensity score matching, the AD group’s manic switch risk was not significantly higher than the non-AD group’s (HR 1.04 [95% CI, 0.96 to 1.13]; P = 0.989). Additionally, no statistically significant difference was observed between patients prescribed antimanic drugs and those who were not (HR 0.69 [95% CI, 0.38 to 1.25]; P = 0.535). Conclusions: This study indicated that antidepressants were widely used in clinical settings for managing bipolar depression. The use of antidepressants was not associated with the risk of mania/hypomania switch when compared to non-antidepressants treatment. Therefore, antidepressants could be considered a treatment option for bipolar depression.

PMID:40464055 | PMC:PMC12130621 | DOI:10.34133/hds.0209

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Analysis of early surgical indications and related factors in neonatal necrotizing enterocolitis

Front Pediatr. 2025 May 20;13:1571921. doi: 10.3389/fped.2025.1571921. eCollection 2025.

ABSTRACT

OBJECTIVE: To explore early surgical indications and clinical predictive factors for neonatal necrotizing enterocolitis (NEC) to improve the prognosis of affected infants.

METHODS: A retrospective analysis was conducted on the clinical data of 146 infants diagnosed with NEC at the Affiliated Hospital of Zunyi Medical University from January 2015 to December 2020. The infants were divided into two groups: the surgical treatment group (56 cases) and the non-surgical treatment group (90 cases). Maternal perinatal conditions, general infant characteristics, clinical manifestations, comorbidities, laboratory tests, and imaging findings were statistically analyzed. Significant factors were further analyzed using multivariate logistic regression, and predictive indicators were assessed by the receiver operating characteristic (ROC) curve and Youden’s index.

RESULTS: Statistically significant differences were observed between the two groups in birth weight, gestational age, abdominal wall erythema, absent bowel sounds, lethargy, fever, peritonitis, septic shock, metabolic acidosis, neonatal acute respiratory distress syndrome, and asphyxia (P < 0.05). No significant differences were found in maternal perinatal conditions, sex, feeding method, age at onset, abdominal distention, bloody stool, vomiting, gastric retention, apnea, neonatal pneumonia, neonatal hyperbilirubinemia, sepsis, electrolyte disturbances, or respiratory failure (P > 0.05). Laboratory and imaging markers such as prealbumin, IL-6, PCT, CRP, WBC, pneumoperitoneum, bowel wall gas, and portal venous gas showed statistically significant differences (P < 0.05). Multivariate logistic regression identified peritonitis (OR = 95.635), IL-6 (OR = 1.001), and portal venous gas (OR = 22.551) as independent risk factors for early surgery in NEC (P < 0.05). ROC curve analysis revealed that IL-6 (AUC = 0.875) and PCT (AUC = 0.798) demonstrated good predictive performance for early surgical intervention. The optimal cutoff values were 476 pg/ml for IL-6 (sensitivity 80.4%, specificity 85.6%) and 1.53 ng/ml for PCT (sensitivity 83.9%, specificity 70%).

CONCLUSION: Peritonitis and portal venous gas are independent risk factors for early surgery in NEC. IL-6 and PCT are reliable predictive markers for determining the need for early surgical intervention in NEC.

PMID:40464051 | PMC:PMC12130016 | DOI:10.3389/fped.2025.1571921

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Application of ultrasound-guided coaxial needle biopsy combined with gelatin sponge plugging in pediatric liver biopsy

Front Pediatr. 2025 May 20;13:1477711. doi: 10.3389/fped.2025.1477711. eCollection 2025.

ABSTRACT

PURPOSE: The aim of this study was to assess the performance of utilizing the coaxial technique in conjunction with gelatin sponge slurry plugging for ultrasound-guided liver biopsy in children.

METHODS: We conducted a retrospective study of children undergoing ultrasound-guided coaxial liver biopsy at our institution between March 2020 and March 2025. Participants were stratified into two intervention groups: those receiving gelatin sponge tract embolization vs. batroxobin administered through needle tract. Through comprehensive electronic medical record review, we systematically extracted and compared the following outcome measures: (a) overall complication rates, (b) hemorrhage rates.

RESULTS: This study included 48 children, with 30 allocated to the gelatin sponge group and 18 to the batroxobin group. The gelatin sponge group demonstrated 9 complications (30.0%, 9/30), consisting of 5 pain events and 4 febrile episodes, while the batroxobin group experienced 6 complications (33.3%, 6/18), including 2 hemorrhage cases, 3 pain events, and 1 febrile episode. The overall complication rates showed no statistically significant difference between groups (30.0% vs. 33.3%, P = 0.809). However, a significant divergence was observed in hemorrhage incidence, with the gelatin sponge group demonstrating superior safety (0% vs. 11.1%, P = 0.044).

CONCLUSION: Compared to batroxobin tract injection, coaxial technique in conjunction with gelatin sponge slurry plugging significantly reduced hemorrhagic complications in liver biopsies for children, demonstrating superior safety. The finding supported its adoption as the preferred hemostatic method in children undergoing percutaneous liver biopsy.

PMID:40464048 | PMC:PMC12129982 | DOI:10.3389/fped.2025.1477711

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Differential impact of neutrophil-to-lymphocyte ratio and time-weighted NLR on mortality and survival in critically ill children: insights from a retrospective study

Front Pediatr. 2025 May 20;13:1559405. doi: 10.3389/fped.2025.1559405. eCollection 2025.

ABSTRACT

BACKGROUND: The intensive care of critically ill children is challenging due to diverse etiologies and rapid disease progression. Early identification of high-risk patients is crucial for improving outcomes. The neutrophil-to-lymphocyte ratio (NLR) has emerged as a potential biomarker reflecting the balance between innate and adaptive immune responses, with studies in adults showing its correlation with mortality and survival in intensive care settings. However, its application in pediatric intensive care units (PICU) is less explored.

OBJECTIVE: To examine the impact and predictive value of NLR on in-hospital mortality and 90-day survival rates in critically ill children using data from the Pediatric Intensive Care (PIC) database at the Children’s Hospital of Zhejiang University School of Medicine.

METHODS: This retrospective cohort study included 3,350 patients from the PIC database, with patients older than 28 days and an ICU stay of at least 48 h. Data on demographic information, ICU admission type, laboratory test results, and clinical outcomes were collected. The normal range of NLR was calculated using the percentile method. Time-weighted NLR was calculated using the trapezoidal rule to estimate the area under the curve of NLR values over time. Statistical analyses included chi-square tests, Mann-Whitney U tests, and multivariable logistic regression to assess the association between NLR and outcomes.

RESULTS: Higher time-weighted NLR levels were significantly associated with increased in-hospital mortality (OR = 1.15, 95% CI: 1.08-1.22, p < 0.001) and shorter ICU length of stay. The Kaplan-Meier survival analysis showed significantly different 90-day survival rates among NLR groups (p = 0.034). Subgroup analysis revealed the highest predictive value of time-weighted NLR in patients under 1 year old with an initial NLR less than 0.48 (AUC = 0.832).

CONCLUSION: The study confirms NLR, particularly in its time-weighted form, as a robust prognostic indicator for critically ill children. Elevated time-weighted NLR levels are associated with increased in-hospital mortality and shorter ICU stays, highlighting its potential for risk stratification and guiding clinical decisions in PICU. The dynamic nature of the time-weighted NLR provides a more accurate reflection of the patient’s inflammatory burden over time. However, the retrospective and single-center design of the study limits the generalizability of the results. Future research should address these limitations and explore the integration of NLR with other clinical and laboratory parameters to enhance prognostic accuracy in pediatric critical care settings.

PMID:40464042 | PMC:PMC12130025 | DOI:10.3389/fped.2025.1559405

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Clinical profile and outcome of pediatric heart surgeries at semi-urban tertiary care cardiac center of Gujarat, India: a 54-month single-center retrospective chart review

Front Pediatr. 2025 May 20;13:1543755. doi: 10.3389/fped.2025.1543755. eCollection 2025.

ABSTRACT

CONTEXT: The most common congenital condition, congenital heart disease (CHD), is often left untreated or doesn’t get timely attention for various reasons. Nowadays, many pediatric cardiac centers in India offer surgical management, even in semi-urban or rural areas. Our center is one of them.

AIMS: This study aims to generate regional data from the Western part of India, primarily to determine the outcome of patients who had surgical intervention at our pediatric cardiac center.

METHODS AND MATERIAL: The present study retrospectively analyzed the data of the operated pediatric patients by reviewing the charts of patients admitted to the pediatric division of the cardiac center between April 2018 and October 2022. All demographic details, anthropometry, preoperative evaluation, operative procedures, postoperative issues, outcomes, etc. were reviewed, and the collected data were entered into Microsoft Excel.

STATISTICAL ANALYSIS: Descriptive statistics were used to present demographic data. Chi-square and Fisher exact tests were applied to find an association, and a p-value of <0.05 was considered statistically significant.

RESULTS: Out of the 422 pediatric admissions during the period studied, 386 underwent cardiac surgeries. The median (Q1, Q3) age of patients in months was 12 (6, 60), and 251 (61.2%) were males. The most prevalent CHD was ventricular septal defect (VSD), accounting for 88 patients (21.6%). Out of the 386 total patients who underwent cardiac surgery, 16 (4.1%) patients experienced mortality. The most common surgeries performed were VSD closure, patent ductus arteriosus ligation, and intracardiac repair for tetralogy of Fallot (TOF).

CONCLUSIONS: Pediatric heart surgery was offered for a varied CHD with comparable mortality and morbidity with other centers.

PMID:40464041 | PMC:PMC12129920 | DOI:10.3389/fped.2025.1543755

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Association Between Length of Stay and Incidence of Hospital-Acquired Anaemia in Critically Ill Patients: A Retrospective Cohort Study

Crit Care Res Pract. 2025 May 27;2025:8884182. doi: 10.1155/ccrp/8884182. eCollection 2025.

ABSTRACT

Hospital-acquired anaemia (HAA) is characterised by initially normal haemoglobin levels upon admission that are lowered during the hospital stay. The decreased haemoglobin levels related to the days of intensive care unit (ICU) hospitalisation may explain the effect of other interventions on haemoglobin levels. This study aimed to investigate the association between decreased haemoglobin levels and days of hospitalisation in critically ill patients in the Qassim region by analysing haemoglobin levels within the first 7, 14, and 21 days after ICU admission. A total of 180 patients were admitted during the study period. Patients with gastrointestinal bleeding, transfusion-dependent anaemia, a history of anaemia or bleeding, those with chronic kidney disease or on dialysis, and those who had hematologic or other malignancies were excluded (n = 97). Finally, those who were at least 18 years old, was within the normal range of haemoglobin upon admission to the ICU and had been hospitalized for at least 21 days in the ICU were included (n = 83). The initial average haemoglobin concentration was higher in men (15.24 g/dL) than in women (13.45 g/dL). Both experienced a significant and relatively parallel decline in haemoglobin levels (8.95 g/dL) and (8.66 g/dL), respectively, throughout the 21 day hospitalization period. The p value (< 0.001) suggests that the fixed effects are statistically significant, indicating that time (days) has a significant effect on haemoglobin levels. This study found a consistent decrease in haemoglobin levels over the ICU hospitalisation period, suggesting a progressive condition or treatment effect leading to reduced haemoglobin levels. However, further studies are required to analyse the causes of HAA in ICU.

PMID:40464039 | PMC:PMC12133354 | DOI:10.1155/ccrp/8884182

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Effect of ethylenediamine tetraacetic acid (EDTA) and maleic acid as root-end conditioners on the sealing ability of ProRoot mineral trioxide aggregate (MTA) and Biodentine as root-end filling materials: An in vitro study

J Dent Res Dent Clin Dent Prospects. 2025 Mar 31;19(1):29-32. doi: 10.34172/joddd.025.41232. eCollection 2025 Mar.

ABSTRACT

BACKGROUND: Apicoectomy is often required to treat a non-healing endodontic lesion. Materials used during this procedure, such as root-end conditioners and retrograde filling materials, can significantly affect the success. Mineral trioxide aggregate (MTA) has been used as a root-end filling material for a long time; however, success has also been reported with some novel materials such as Biodentine. The present study compared the sealing ability of MTA and Biodentine in root-end cavities following apicoectomy after using EDTA and maleic acid as root-end conditioners.

METHODS: The apical one-third of 60 extracted teeth were resected, followed by root-end preparation of 3 mm. The samples were divided into 4 groups of 15 each. The roots in groups 1 and 2 were conditioned with EDTA and maleic acid in groups 3 and 4. Retrograde cavities in groups 1 and 3 were filled with MTA and in groups 2 and 4 with Biodentine. Microleakage was checked using the dye penetration method. One-way ANOVA and post hoc Tukey tests were used for statistical analyses.

RESULTS: Group 1 showed the highest (2.94±0.112), while group 4 had the least dye penetration (2.55±0.213).

CONCLUSION: It can be concluded that Biodentine showed better sealing ability after using maleic acid than MTA and can be used as an alternative to MTA in root-end surgeries.

PMID:40464030 | PMC:PMC12128211 | DOI:10.34172/joddd.025.41232

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A randomized clinical trial on innovative functional esthetic appliance for craniofacial growth modulation with 3D analysis of TMJ

J Dent Res Dent Clin Dent Prospects. 2025 Mar 31;19(1):46-56. doi: 10.34172/joddd.025.41487. eCollection 2025 Mar.

ABSTRACT

BACKGROUND: The present study evaluated condylar position changes using cone beam computed tomography (CBCT) in treating Cl II malocclusion with the twin block and clear functional jaw corrector (CFJC) appliances.

METHODS: In this RCT, we included 60 patients, with 30 in each treatment group (control group: twin block appliance, case group: CFJC appliance), randomly allocated using a lottery system. A twin block appliance or CFJC was fabricated for each patient following the protocol. Pre- and post-treatment records were collected over twelve months at 0-, 6- and 12-month intervals using cephalograms, CBCT, and questionnaires assessing the patient perception of the appliance.

RESULTS: Both groups showed significant improvements in malocclusion. Cephalometric analysis showed statistically significant differences between the two groups in SNB, ANB, and U1-NA. In comparing the two groups, significant differences were found in Arnett’s soft tissue parameters, including upper lip to E line, lower lip to E line, upper lip protrusion, upper lip length, lower lip length, lower 1/3 of the face, maxillary first incisor exposure, and mandibular height in the CFJC group. The intergroup comparison of projections to TVL (true vertical line) also showed significant differences across all parameters in the CFJC group. Furthermore, significant disparities in CBCT parameters were observed between the groups, specifically in condylar position, condylar height, and anterior joint space. Also, significant differences in patient comfort and perception of the appliance were observed, highlighting better compliance with the CFJC appliance.

CONCLUSION: The CFJC appliance is a top choice for Cl II malocclusion due to its superior effectiveness in skeletal, dental, and soft tissue improvements and significant condylar remodeling. Additionally, patients showed better compliance and acceptance of the CFJC appliance compared to traditional options, enhancing its clinical advantage in orthodontic practice.

PMID:40464026 | PMC:PMC12128203 | DOI:10.34172/joddd.025.41487

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Maternal pre- and perinatal depression and the risk of autism spectrum disorders in offspring: systematic review and meta-analysis

BJPsych Open. 2025 Jun 4;11(4):e117. doi: 10.1192/bjo.2025.67.

ABSTRACT

BACKGROUND: Studies have reported conflicting findings on the association between maternal pre- and perinatal depression and autism spectrum disorder (ASD) in offspring.

AIMS: To examine and consolidate the existing evidence on the association between maternal pre- and perinatal depression and the risk of ASD in children and adolescents.

METHOD: In this systematic review and meta-analysis, we searched PubMed, Medline, EMBASE, Scopus, CINAHL and PsycINFO from the database inception to 21 February 2024. A meta-analysis was performed using random-effect models, and summary effect estimates were presented as odds ratios with 95% confidence intervals. Heterogeneity was assessed with Cochran’s Q and the I2-statistic test. Additionally, subgroup analysis was conducted to identify the source of potential heterogeneity within the included studies. A funnel plot and Egger’s regression test were employed to evaluate publication bias.

RESULTS: Twelve studies involving over 1.6 million mother-offspring pairs were included in the final analysis. A random-effects meta-analysis of these studies revealed a 52% increased risk (odds ratio 1.52, 95% CI 1.13-1.90) of ASD in the offspring of mothers experiencing pre-pregnancy depression, a 48% increased risk (odds ratio 1.48, 95% CI 1.32-1.64) in those experiencing antenatal depression and a 70% increased risk (odds ratio 1.70, 95% CI 1.41-1.99) in those with postnatal depression.

CONCLUSIONS: This systematic review and meta-analysis found that offspring born to mothers with depression before, during and after birth have a higher risk of developing ASD. Our findings underscore the need for early screening and targeted intervention programmes for at-risk children.

PMID:40462259 | DOI:10.1192/bjo.2025.67