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Nevin Manimala Statistics

Comparing shallow, deep, and transfer learning in predicting joint moments in running

J Biomech. 2021 Oct 24;129:110820. doi: 10.1016/j.jbiomech.2021.110820. Online ahead of print.

ABSTRACT

Joint moments are commonly calculated in biomechanics research and provide an indirect measure of muscular behaviors and joint loads. However, joint moments cannot be easily quantified clinically or in the field, primarily due to challenges measuring ground reaction forces outside the laboratory. The present study aimed to compare the accuracy of three different machine learning (ML) techniques – functional regression [ MLfregress ], a deep neural network (DNN) built from scratch [ MLDNN ], and transfer learning [ MLTL ], in predicting joint moments during running. Data for this study came from an open-source dataset and two studies on running with and without external loads. Three-dimensional (3D) joint moments of the hip, knee, and ankle, were derived using inverse dynamics. 3D joint angle, velocity, and acceleration of the three joints served as predictors for each of the three ML techniques. Prediction performance was generally the best using MLDNN, and the worse using MLfregress. Absolute predictive performance was the best for sagittal plane moments, which ranged from a RMSE of 0.16 Nm/kg at the ankle using MLDNN, to a RMSE of 0.49Nm/kg at the knee using MLfregress. MLDNN resulted in the greatest improvement in relative prediction performance (relRMSE) by 20% compared to MLfregress for the ankle adduction-abduction moment. DNN with or without transfer learning was superior in predicting joint moments using kinematic inputs compared to functional regression. Synergizing ML with kinematic inputs has the potential to solve the constraints of obtaining high fidelity biomechanics data normally only possible during laboratory studies.

PMID:34717160 | DOI:10.1016/j.jbiomech.2021.110820

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Nevin Manimala Statistics

Outcomes of isolated distal thrombosis managed with serial compression ultrasonography

Thromb Res. 2021 Oct 21;208:66-70. doi: 10.1016/j.thromres.2021.10.004. Online ahead of print.

ABSTRACT

BACKGROUND: Isolated distal deep vein thrombosis (IDDVT) is a common subtype of deep vein thrombosis (DVT). Consensus guidelines provide conflicting recommendations for IDDVT management; some recommend anticoagulant treatment, while others suggest serial compression ultrasonography (CUS) monitoring for patients not at “high risk” of proximal extension. The purpose of this study was to describe outcomes of serial CUS-monitored IDDVT and identify risk factors for proximal thrombus extension or anticoagulant treatment initiation.

METHODS: A retrospective descriptive study was conducted using electronic data from University of Utah Health. Adult subjects with objectively confirmed, serial CUS-monitored IDDVT were included. Subjects were followed for 30 days for occurrence of a composite outcome of proximal thrombus extension or anticoagulant treatment initiation. Descriptive statistics were used to summarize characteristics of the study population. Characteristics were compared across outcome groups using inferential statistics.

RESULTS: A total of 182 subjects were included, with 53 subjects (29.1%) experiencing the composite outcome. Of these, 12 (22.6%) experienced proximal thrombus extension and 41 (77.4%) initiated anticoagulant treatment. A prior history of venous thromboembolism (VTE) was significantly higher in those who experienced the composite outcome than in those who did not.

CONCLUSIONS: Our results suggest that 70% of patients with serial CUS-monitored IDDVT did not experience thrombus extension or require anticoagulant treatment within 30 days of diagnosis, regardless of risk factors for proximal extension. Serial CUS monitoring may be a useful management strategy for IDDVT. A history of VTE may identify patients more likely to experience proximal thrombus extension or require anticoagulation.

PMID:34717132 | DOI:10.1016/j.thromres.2021.10.004

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Nevin Manimala Statistics

Unravelling capability of municipal wastewater treatment plant in Thailand for microplastics: Effects of seasonality on detection, fate and transport

J Environ Manage. 2021 Oct 27;302(Pt A):113990. doi: 10.1016/j.jenvman.2021.113990. Online ahead of print.

ABSTRACT

Many factors can affect microplastics (MPs) behaviors in aquatic environments. The effects of seasonal and meteorological conditions on MPs are not well understood. This study demonstrates the impacts of seasonality on the fate and transport, and the efficacy of MPs removal by a wastewater treatment plant. The fate and transport of MPs at a WWTP in Nonthaburi, Thailand were tracked during the dry and wet seasons of 2019-2020. Polypropylene (PP), polyethylene (PE), and toothpaste formulations were the most abundant MP types observed. Total detected MP quantities ranged between 76 and 192 particles L-1 during the dry season, and only 36-68 particles L-1 during the wet season, indicating runoff dilution effects. T-test analysis found a statistically significant difference between MP concentrations between the dry and wet seasons of 2019-2020. Spearman’s correlation showed statistically strong negative relationships between MP concentrations versus wastewater flow, and MP concentrations versus precipitation; a positive correlation between MP abundance versus temperature in the treatment system was observed. During the dry seasons, MPs were mostly found in the aeration process, and were mostly rayon or polyester particles in the shape of fibers. Contrarily, in the wet seasons, MPs were detected in both the raw influent and aeration process, with PE, polyacrylate, and polyethylene terephthalate fragments dominating the make-up. MPs were also detected in the return activated sludge, thus calling for proper sludge age and drainage management. No MPs were detected in the plant’s effluent during the wet season, suggesting that the plant had sufficient MPs removal capability during normal wet-season conditions. Overall, this study suggests that municipalities should focus on increasing MPs removal efficiency of wastewater treatment plants for dry seasons, while properly managing the water flows of combined sewage systems to prevent overflows that may inevitably become point-sources of MPs release into water bodies during wet seasons.

PMID:34717107 | DOI:10.1016/j.jenvman.2021.113990

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Nevin Manimala Statistics

The impact of three-dimensional visualisation on midwifery student learning, compared with traditional education for teaching the third stage of labour: A pilot randomised controlled trial

Nurse Educ Today. 2021 Oct 23;108:105184. doi: 10.1016/j.nedt.2021.105184. Online ahead of print.

ABSTRACT

BACKGROUND: Complex physiological processes are often difficult for midwifery students to comprehend when using traditional teaching and learning approaches. Face to face instructional workshops using simulation have had some impact on improving understanding. However, in the 21st century new technologies offer the opportunity to provide alternative learning approaches.

AIM: To investigate the impact of using three-dimensional (3D) visualisation in midwifery education on student’s experience of learning, and retention of knowledge at three points in time.

DESIGN: A pilot study involving a two-armed parallel Randomised Controlled Trial (RCT) comparing the retention of knowledge scores between the control and intervention groups.

SETTING: An Australian University in the Northern Territory.

PARTICIPANTS: The sample included second year Bachelor of Midwifery students (n = 38). All received traditional midwifery education before being randomly allocated to either the intervention (n = 20) or control (n = 18) group.

METHODS: A new immersive virtual environment was introduced to complement existing traditional midwifery education on the third stage of labour. This intervention was evaluated using a demographic survey and multiple-choice questionnaire to collect baseline information via Qualtrics. To measure change in knowledge and comprehension, participants completed the same multiple-choice knowledge questionnaire at three time points; pre, immediately post and at 1 month post intervention. In addition, the intervention group completed a 3D student satisfaction survey.

RESULTS: Baseline knowledge scores were similar between the groups. A statistically significant increase in knowledge score was evident immediately post intervention for the intervention group, however there was no significant difference in knowledge score at one month.

CONCLUSIONS: The results support the creation of further three-dimensional visualisation teaching resources for midwifery education. However, a larger randomised controlled study is needed to seek generalisation of these findings to confirm enhanced student learning and retention of knowledge post 3DMVR, beyond the immediate exposure time.

PMID:34717099 | DOI:10.1016/j.nedt.2021.105184

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Nevin Manimala Statistics

Comparison of postoperative complications and long-term oncological outcomes in minimally invasive versus open pancreatoduodenectomy for distal cholangiocarcinoma: A propensity score matching analysis

J Hepatobiliary Pancreat Sci. 2021 Oct 30. doi: 10.1002/jhbp.1067. Online ahead of print.

ABSTRACT

BACKGROUND: Pancreatoduodenectomy (PD) is an only curative therapy for distal cholangiocarcinoma (dCC). There has been no study to compare outcomes between minimally invasive pancreatoduodenectomy (MIPD) and open pancreatoduodenectomy (OPD) for dCC. The aim of the study is to compare the two operation types for dCC in terms of postoperative and oncologic outcomes.

METHODS: Data from 426 patients who underwent MIPD (n=91) or OPD (n=335) for dCC from January 2012 to December 2019 at two tertiary hospitals were retrospectively reviewed. After 1:2 propensity score matching, postoperative and oncologic outcomes were compared.

RESULTS: MIPD group showed more favorable results than OPD group in terms of blood loss (MIPD vs. OPD, 250[150-400] vs. 400[200-600], ml, p<0.001), and length of hospital stay (19.8±11.3 vs. 26.6±14.3, days, p<0.001). OPD group showed more favorable results than MIPD group in terms of operation time (MIPD vs. OPD, 457±70 vs. 398±85, min., p<0.001), and harvested lymph nodes (14.9±7.8 vs. 20.7±11.5, p<0.001). There was no statistical difference between the 2 groups in the R0 resection rate and complications. In long-term survival analysis, there was no significant difference between the 2 groups.

CONCLUSION: MIPD showed comparable postoperative complications and long-term oncologic survival with OPD in the treatment of dCC.

PMID:34717038 | DOI:10.1002/jhbp.1067

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Progressive decline of function in renal allografts with normal one year biopsies: Gene expression studies fail to identify a classifier

Clin Transplant. 2021 Oct 30:e14456. doi: 10.1111/ctr.14456. Online ahead of print.

ABSTRACT

Histologic findings on 1-year biopsies such as inflammation with fibrosis and transplant glomerulopathy predict renal allograft loss by 5 years. However, almost half of the patients with graft loss have a 1-year biopsy that is either normal or has only interstitial fibrosis. The goal of this study was to determine if there was a gene expression profile in these relatively normal 1-year biopsies that predicted subsequent decline in renal function. Using transcriptome microarrays we measured intragraft mRNA levels in a retrospective Discovery cohort (170 patients with a normal/minimal fibrosis 1-year biopsy, 54 with progressive decline in function/graft loss and 116 with stable function) and developed a nested 10-fold cross-validated gene classifier that predicted progressive decline in renal function (positive predictive value = 38 ± 34%%; negative predictive value = 73 ± 30%, c-statistic = 0.59). In a prospective, multicenter Validation cohort (270 patients with Normal/Interstitial Fibrosis [IF]), the classifier had a 20% positive predictive value, 85% negative predictive value and 0.58 c-statistic. Importantly, the majority of patients with graft loss in the prospective study had 1-year biopsies scored as Normal or IF. We conclude predicting graft loss in many renal allograft recipients (i.e. those with a relatively normal 1-year biopsy and eGFR >40) remains difficult. This article is protected by copyright. All rights reserved.

PMID:34717009 | DOI:10.1111/ctr.14456

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Nevin Manimala Statistics

A stabilized finite volume element method for solving Poisson-Nernst-Planck equations

Int J Numer Method Biomed Eng. 2021 Oct 30:e3543. doi: 10.1002/cnm.3543. Online ahead of print.

ABSTRACT

One difficulty in solving the Poisson-Nernst-Planck (PNP) equations used for studying the ion transport in channel proteins is the possible convection-dominant problem in the Nernst-Planck equations. In this paper, to overcome this issue, considering the general mixed boundary conditions of concentration functions on the interface, a novel stabilized finite volume element method based on the standard weak formulation to solve the steady-state PNP equations is proposed and analyzed. Numerical tests on four ion-channel proteins served as benchmark with varying boundary conditions in a certain range show that the new stabilized technique not only improves the robustness of the new PNP solver, but also makes the computed maximal concentration values much more reasonable. This article is protected by copyright. All rights reserved.

PMID:34716987 | DOI:10.1002/cnm.3543

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Nevin Manimala Statistics

Independent effects of amyloid and vascular markers on long-term functional outcomes: An 8-year longitudinal study of subcortical vascular cognitive impairment

Eur J Neurol. 2021 Oct 30. doi: 10.1111/ene.15159. Online ahead of print.

ABSTRACT

OBJECTIVE: Subcortical vascular cognitive impairment (SVCI) is characterized by the presence of cerebral small vessel disease (CSVD) markers. Some SVCI patients also show Alzheimer’s disease and cerebral amyloid angiopathy (CAA) markers. However, the effects of these imaging markers on long-term clinical outcomes have not yet been established. The present study, therefore, aimed to determine how these imaging markers influence functional disability and/or mortality.

METHODS: We recruited 194 participants with SVCI from the memory clinic and followed them up. All participants underwent brain MRI at baseline, and 177 (91.2%) participants underwent beta-amyloid (Aβ) PET. We examined the occurrence of ischemic or hemorrhagic strokes. We also evaluated functional disability and mortality using the modified Rankin scale. To determine the effects of imaging markers on functional disability or mortality, we used the Fine and Gray competing regression or the Cox regression analysis.

RESULTS: During a 8.6-year follow-up period, 46 of 194 (23.7%) patients experienced a stroke, 110 (56.7%) patients developed functional disabilities and 75 (38.6%) died. Aβ positivity (subdistribution hazard ratio [SHR] = 2.73), larger white matter hyperintensity (WMH) volume (SHR = 3.11) and ≥3 microbleeds (SHR = 2.29) at baseline were independent predictors of functional disability regardless of the occurrence of stroke. Larger WMH volume (hazzard ratio [HR] = 2.07) was an independent predictor of mortality.

CONCLUSIONS: Our findings suggest that diverse imaging markers may predict long-term functional disability and mortality in patients with SVCI, which in turn may provide clinicians with a more insightful understanding of the long-term outcomes of SVCI.

PMID:34716964 | DOI:10.1111/ene.15159

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Is there a bias against open surgery for colorectal cancer?

Colorectal Dis. 2021 Oct 30. doi: 10.1111/codi.15973. Online ahead of print.

ABSTRACT

Fahim et al. (1) report increased mortality after open colorectal cancer surgery (HR1.26). Is this conclusion validated by the presented data? The explanation of decision process regarding type of surgery is probably not sufficient, as at the end of the analysed period (2018) only 4% patients had open surgery. With such a low percentage of patients having open surgery comparison with laparoscopic surgery group is difficult.

PMID:34716955 | DOI:10.1111/codi.15973

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Nevin Manimala Statistics

Topical clonazepam for Burning Mouth Syndrome: is it efficacious in patients with anxiety or depression?

J Oral Rehabil. 2021 Oct 30. doi: 10.1111/joor.13275. Online ahead of print.

ABSTRACT

BACKGROUND: Burning mouth syndrome (BMS) is a chronic disorder characterized by pain in the oral cavity without clinically evident causative lesions. The etiology of this condition is poorly understood, and treatment can be challenging.

METHOD: A retrospective review of the medical records of 82 patients with BMS was performed. Data on demographics, BMS associated symptoms, symptoms’ intensity score (NRS: 0-10) and response to treatment with topical clonazepam were extracted from clinical notes based on a standardized clinical questionnaire. Differences in the symptoms’ intensity score between patients with or without concomitant anxiety/depression or systemic psychogenic medication use were analyzed using the Wilcoxon signed rank test.

RESULTS: Among the entire cohort, the median symptoms’ intensity score at baseline was 4.5 and 3.0 at first follow-up, a statistically significant improvement (p <0.001; 95% CI). Among the subjects with anxiety/depression and those who were prescribed systemic psychogenic medications, the median symptoms’ intensity score at baseline was 5.0 and 3.0 at first follow up, a statistically significant improvement (p<0.001; 95% CI). Among those without anxiety/depression, the symptoms’ intensity score at baseline was 4.0 and 2.0 at first follow up, a statistically significant improvement (p< 0.05; 95% CI). The median symptoms’ intensity score for those who were not on any psychogenic medications at baseline was 4.0 and 2.0 at first follow up, a statistically significant improvement (p<0.001; 95% CI).

CONCLUSIONS: Clinicians are encouraged to prescribe topical clonazepam for BMS regardless of concomitant use of systemic psychogenic medications or comorbid mood disorders as it is an efficacious management approach in the presence or absence of these potentially complicating factors.

PMID:34716948 | DOI:10.1111/joor.13275