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Nevin Manimala Statistics

Comparative assessment of the corneal endothelium following phacoemulsification surgery in patients with type II diabetes and nondiabetes

Saudi J Ophthalmol. 2024 Mar 26;39(1):77-83. doi: 10.4103/sjopt.sjopt_226_23. eCollection 2025 Jan-Mar.

ABSTRACT

PURPOSE: The purpose is to assess the corneal endothelial changes after phacoemulsification surgery in diabetic patients and compare with those of nondiabetic subjects.

METHODS: The study compared the corneal endothelial changes in diabetics and nondiabetics after phacoemulsification surgery. The study population included 40 patients with diabetes mellitus with good glycemic control and 40 nondiabetic patients who underwent uneventful phacoemulsification surgery. Central corneal endothelial cell density (ECD), central corneal thickness (CCT), and percentage of hexagonality percentage coefficient of variation (%CV) were measured preoperatively and postoperatively (at 4 and 12 weeks) using a specular microscope.

RESULTS: Mean ECD loss (%) was measured as 9.85% and 8.41% at 4 weeks and 12 weeks postoperatively in the diabetic group while ECD loss percentage was 7.09% and 5.74% in the control group at the same time intervals, respectively. Furthermore, a significant difference was noted on comparing mean ECD measurements between the two groups at the postsurgical visits (4 weeks and 12 weeks). While the CCT was found to be similar in both diabetic and nondiabetic patients, increase was observed in the values of (%CV in both the groups at postoperative 4 weeks’ and 12 weeks’ follow-up. The values of both %CV and percentage hexagonality showed statistically significant differences between the diabetic and nondiabetic group before surgery and at 4 weeks’ and 12 weeks’ postoperative examinations.

CONCLUSION: The patients with diabetes suffered greater endothelial damage despite good glycemic control as compared to nondiabetic patients which indicates the necessity of far more care to protect cornea endothelium in patients with diabetes.

PMID:40182979 | PMC:PMC11964349 | DOI:10.4103/sjopt.sjopt_226_23

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Nevin Manimala Statistics

Conjunctival impression cytology and tear film changes in patients with type 2 diabetes mellitus and its correlation with severity of diabetic retinopathy

Saudi J Ophthalmol. 2024 Aug 8;39(1):71-76. doi: 10.4103/sjopt.sjopt_214_23. eCollection 2025 Jan-Mar.

ABSTRACT

PURPOSE: Dry eye symptoms can substantially affect the quality of life and visual outcome. There are several studies on ocular surface changes reported in diabetic patients. There is limited literature defining the relationship between dry eye with diabetic retinopathy (DR). The study aimed to find out the correlation of dry eye with the severity of DR.

METHODS: In a cross-sectional observational study, we recorded the grading of dry eye in patients with DR on Schirmer’s, tear film breakup time (TBUT), and impression cytology. We correlated the severity of dry eye with the severity of retinopathy using Spearman’s correlation and Kruskal-Wallis test. We also found a significant correlation between glycemic control and the severity of dry eye. P < 0.05 was considered statistically significant.

RESULTS: One hundred and eighty-four eyes of 96 patients with DR were assessed. One hundred and fifty-eight eyes with nonproliferative DR and thirty-four eyes with proliferative DR were included in the study. Mean Schirmer’s and TBUT values were 15.4 ± 5.8 mm and 10.1 ± 2.8 s, respectively. Average impression cytology grade on Modified Nelson’s grading was found to be Grade 3. A positive correlation was found between the severity of dry eye with the severity of DR on Schirmer’s, TBUT, and impression cytology.

CONCLUSION: Diabetics with severe grades of retinopathy had poor tear function along with compared to those with milder grades of DR. Hence, routine screening of the ocular surface should become a part of diabetic eye evaluation.

PMID:40182977 | PMC:PMC11964339 | DOI:10.4103/sjopt.sjopt_214_23

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Nevin Manimala Statistics

Comparison of focal loss volume, global loss volume, retinal nerve fiber layer thickness, and corneal epithelial thickness in eyes with glaucoma and suspicious optic discs

Saudi J Ophthalmol. 2024 Mar 26;39(1):89-94. doi: 10.4103/sjopt.sjopt_164_23. eCollection 2025 Jan-Mar.

ABSTRACT

PURPOSE: The purpose of this study was to study the role of the focal loss volume (FLV), global loss volume (GLV), and other spectral-domain optical coherence tomography (SD-OCT) parameters in early diagnosis of glaucomatous damage.

METHODS: A retrospective study included records of 34 eyes with early glaucoma (Group A) and 17 eyes with suspicious optic discs (Group B). Retinal nerve fiber layer (RNFL), ganglion cell complex (GCC), and corneal thickness parameters were assessed by the SD OCT (RTVue SD-OCT). These included the FLV, GLV, in addition to RNFL thickness, cup/disc ratio, GCC thickness, and anterior segment OCT for assessment of central corneal thickness and central corneal epithelial thickness. Data from both groups were subjected to statistical analysis.

RESULTS: The FLV and GLV had the highest areas under the receiver operating characteristic curve in Group A eyes. FLV had higher (97.2%) specificity and was the earliest parameter to be affected by glaucomatous damage, followed by GLV. Moreover, Group A eyes had significant thinning of the RNFL (91.59 μm) compared to Group B (118.18 μm), and GCC thickness was also significantly thinner in Group A (92.07 μm) than in Group B (110.54 μm). Interestingly, Group A eyes had thinner corneal epithelium (nonsignificant) than Group B.

CONCLUSION: FLV and GLV were of the greatest value in the assessment of early glaucomatous GCC degeneration.

PMID:40182976 | PMC:PMC11964348 | DOI:10.4103/sjopt.sjopt_164_23

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Nevin Manimala Statistics

Causal relationships between serum metabolites and coronary heart disease risk: a mendelian randomization study

Front Genet. 2025 Mar 20;16:1440364. doi: 10.3389/fgene.2025.1440364. eCollection 2025.

ABSTRACT

BACKGROUND: Coronary heart disease (CHD) represents a substantial global burden in terms of morbidity and mortality. Understanding the causal relationships between serum metabolites and CHD can provide a crucial understanding of disease mechanisms and potential therapeutic targets.

METHODS: We conducted a Mendelian randomization (MR) approach to explore the potential causal associations between serum metabolites and CHD risk. The primary analysis employed the inverse variance weighted (IVW) method, supplemented by additional analyses, including MR-Egger, weighted median, weighted mode, and sample mode. To bolster the robustness and reliability of our findings, we performed sensitivity analyses, which included evaluating, horizontal pleiotropy and leave-one-out analysis. Additionally, pathway enrichment analysis was conducted.

RESULTS: We identified 15 known and 11 unknown metabolites with potential associations to CHD. Among the known, six displayed protective effects, while nine were identified as risk factors. Notably, many of these metabolites are closely related to mitochondrial function, which was further supported by pathways and enrichment analysis. Using multiple statistical models to ensure robust results, we unveiled a significant association between hexadecanedioate, a palmitoyl lipid metabolized in mitochondria, and a ∼18% reduced risk of CHD (OR = 0.82, 95%CI: 0.72-0.93).

CONCLUSION: MR analysis revealed 6 protective molecules, 9 hazardous metabolites associated with CHD. Many of these known metabolites are closely link to mitochondrial function, suggesting a critical role of mitochondria in CHD development. In particular, hexadecanedioate, an essential component for mitochondrial energy production, was inversely associated with CHD risk. This suggests that mitochondrial function, and specifically the role of hexadecanedioate, may be pivotal in the development and progression of CHD.

PMID:40182922 | PMC:PMC11965349 | DOI:10.3389/fgene.2025.1440364

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Nevin Manimala Statistics

A large-scale genome-wide study of gene-sleep duration interactions for blood pressure in 811,405 individuals from diverse populations

Mol Psychiatry. 2025 Apr 4. doi: 10.1038/s41380-025-02954-w. Online ahead of print.

ABSTRACT

Although both short and long sleep duration are associated with elevated hypertension risk, our understanding of their interplay with biological pathways governing blood pressure remains limited. To address this, we carried out genome-wide cross-population gene-by-short-sleep and long-sleep duration interaction analyses for three blood pressure traits (systolic, diastolic, and pulse pressure) in 811,405 individuals from diverse population groups. We discovered 22 novel gene-sleep duration interaction loci for blood pressure, mapped to 23 genes. Investigating these genes’ functional implications shed light on neurological, thyroidal, bone metabolism, and hematopoietic pathways that necessitate future investigation for blood pressure management that caters to sleep health lifestyle. Non-overlap between short sleep (12) and long sleep (10) interactions underscores the plausible nature of distinct influences of both sleep duration extremes in cardiovascular health. Several of our loci are specific towards a particular population background or sex, emphasizing the importance of addressing heterogeneity entangled in gene-environment interactions, when considering precision medicine design approaches for blood pressure management.

PMID:40181193 | DOI:10.1038/s41380-025-02954-w

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Nevin Manimala Statistics

Modeling the compressive strength behavior of concrete reinforced with basalt fiber

Sci Rep. 2025 Apr 3;15(1):11493. doi: 10.1038/s41598-025-96343-6.

ABSTRACT

This research investigates the compressive strength behavior of basalt fiber-reinforced concrete (BFRC) using machine learning models to optimize predictions and enhance its practical applications. The study incorporates various modeling techniques, including Artificial Neural Networks (ANN), k-Nearest Neighbors (KNN), Support Vector Machines (SVM), Decision Trees, and Random Forest (RF), to evaluate their predictive capabilities. Basalt Fiber Reinforced Concrete (BFRC) is a composite material that incorporates basalt fibers into traditional concrete to enhance its mechanical and durability properties. The use of basalt fibers, derived from natural volcanic rocks, aligns with sustainability goals due to their eco-friendliness, cost-effectiveness, and high performance. BFRC combines structural excellence with sustainability, making it an ideal material for modern construction practices. Its ability to enhance performance, reduce environmental impact, and ensure long-term durability positions it as a pivotal solution for sustainable infrastructure development. The developed models were used to predict compressive strength of basalt fiber concrete (Cs_bf) using the concrete mixture contents, age, and fiber dimensions. All the developed models were created using “Orange Data Mining” software version 3.36. A total of three hundred and nine (309) records were collected from literature for compressive strength for different mixing ratios of basalt fiber concrete with concrete at different ages. Each record contains the following data: C-Cement content (Kg/m3), FA-Fly ash content (Kg/m3), W-Water content (Kg/m3), SP-Super-plasticizer content (Kg/m3), CAg-Coarse aggregates content (Kg/m3), FAg-Fine aggregates content (Kg/m3), Age-The concrete age at testing (days), L_b-length of basalt fibers (mm), d_bf-Diameter of basalt fibers (µm), V_bf-Volume content of basalt fibers (%) and Cs_bf-Compressive strength of basalt fibre concrete (MPa). The collected records were divided into training set (249 records≈80%) and validation set (60 records≈ 20%). At the end of the process, it can be shown that the present research work outclassed other ML techniques applied in the previous research paper, which reported the utilization of the same size of data entries and basalt reinforced concrete constituents. Taylor chart for measured compressive strength of basalt fiber reinforced concrete predicted with ANN, KNN, SVM, Tree and RF is presented for comparing the performance of predictive models by illustrating three key statistical measures simultaneously: the correlation coefficient (R), the normalized standard deviation (σ), and the root-mean-square error (RMSE). Finally, it can be deduced that after considering the performance indices of the selected ensemble and classification models utilized in this present research paper, all the developed modes have almost the same excellent level of accuracy 95%, but ANN, KNN, and SVR produced R2 of 0.98 each with KNN producing MAE of 1.4 MPa, and MSE of 2.5 MPa to outperform ANN and SVR which produced MAE of 1.55 MPa/MSE of 4.1 MPa and MAE of 1.6 MPa/MSE of 3.85 MPa, respectively. Three techniques were used to estimate the impact of each input on the compressive strength, namely correlation matrix, sensitivity analysis and relative importance chart.

PMID:40181176 | DOI:10.1038/s41598-025-96343-6

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Nevin Manimala Statistics

Effect of melatonin on passive, ex-vivo biomechanical behavior of lamb esophagus

Sci Rep. 2025 Apr 3;15(1):11458. doi: 10.1038/s41598-025-96288-w.

ABSTRACT

One of the purposes of tissue engineering is to offer therapeutic alternatives to treat various esophagus-related diseases. To develop viable esophageal replacements that are both mechanically and biologically compatible and to assess the impact of pharmacological treatments on esophageal tissue at the macro- and micro-structural levels, it is crucial to understand the biomechanical properties of the esophagus. In this study, we analyzed esophageal tissue samples from nine newborn lambs. Subjects were randomly separated into a control group (n = 5) and a melatonin-treated group (n = 4). The passive mechanical response of the esophagus was studied by performing in-vitro uniaxial tensile tests along longitudinal and circumferential directions. Samples were classified into three types: internal tissue (mucosa and submucosa layers), external tissue (external muscular layer), and integrated tissue (comprising all layers). Uniaxial stress versus stretch curves of each classification were used to determine mechanical properties that were statistically analyzed. Moreover, average experimental results were used to calibrate an anisotropic hyperelastic model. Stress-stretch curves from uniaxial tests showed a highly anisotropic behavior, with a higher stiffness along the longitudinal direction and internal tissue exhibiting the highest stiffness. To contrast the results obtained from mechanical testing, histological analysis of esophagus samples was carried out. Microstructural components were quantified and morphological measurements of the main zones were performed. No significant differences were found at the macro- and microstructural levels of the tissue, indicating that the supply of low doses of melatonin does not alter the biomechanical properties of the esophagus.

PMID:40181158 | DOI:10.1038/s41598-025-96288-w

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Nevin Manimala Statistics

Poly-sialylated glycan of cervicovaginal fluid can be a potential marker of preterm birth

Sci Rep. 2025 Apr 3;15(1):11456. doi: 10.1038/s41598-025-96682-4.

ABSTRACT

Preterm birth is a global health issue associated with neonatal death and morbidity. However, current methods of predicting preterm birth are insufficient to accurately screen for risk. This study aimed to assess the potential of site-specific N-glycosylation of cervicovaginal fluid (CVF) proteins as predictive biomarkers of preterm birth in a case-control study. Statistical analysis used Student’s t-tests, ROC curve and logistic regression adjusted age and BMI. Using N-glycoproteomic analysis of the CVF, we identified 862 N-glycoproteins in CVF samples form 20 pregnancies and 6595 N-linked glycopeptides used a false discovery rate of less than 1%. Of 173 upregulated glycan in preterm group, we found low levels of fucosylation and high levels of sialylation in preterm birth (p < 0.05). Then we found that three poly-sialylated glycans had a high predictive value (AUC = 0.802, p < 0.017), which were expressed in all samples. In addition, the glycan model with clinical markers performed better. The results indicate that poly-sialylated glycans in CVF have potential value as novel clinical markers for predicting preterm birth during pregnancy. This study suggests strategies for developing new predictive biomarkers using cervicovaginal glycans to detect preterm birth in advance.

PMID:40181148 | DOI:10.1038/s41598-025-96682-4

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Nevin Manimala Statistics

Preoperative pan-immuno-inflammatory values and albumin-to-globulin ratio predict the prognosis of stage I-III colorectal cancer

Sci Rep. 2025 Apr 3;15(1):11517. doi: 10.1038/s41598-025-96592-5.

ABSTRACT

This study evaluated the prognostic value of the pan-immune-inflammation value (PIV) combined with the albumin-to-globulin ratio (AGR) for postoperative survival in colorectal cancer (CRC) patients and developed a nomogram for survival prediction. A total of 650 CRC patients who underwent radical surgery were included, with data from one institution used as the training set. The optimal cut-off values for PIV (426.8) and AGR (1.4) were determined using maximally selected rank statistics. Kaplan-Meier analysis showed that patients in the low-PIV group had significantly better 5-year overall survival (OS) compared to the high-PIV group, while those in the high-AGR group had better 5-year OS than those in the low-AGR group. Multivariate analysis identified age, N stage, degree of differentiation, PIV, and AGR as independent prognostic factors for OS. A nomogram for OS was developed and validated, demonstrating robust predictive performance. This study highlights the value of PIV and AGR as reliable indicators for predicting OS in CRC patients, with high PIV and low AGR associated with worse prognosis. Timely interventions may improve patient outcomes.

PMID:40181140 | DOI:10.1038/s41598-025-96592-5

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Nevin Manimala Statistics

Trend and multivariate decomposition analysis of modern contraceptive utilization among women in Ethiopia

Sci Rep. 2025 Apr 3;15(1):11503. doi: 10.1038/s41598-025-96394-9.

ABSTRACT

Analyzing the trend and identifying the factors influencing the utilization of modern contraceptives is essential for designing effective measures to improve reproductive health and economic development to ensure universal access to family planning services. This study aimed to investigate the trends in modern contraceptive use among women of reproductive age in Ethiopia and the factors influencing these trends. Data from the 2014 to 2019 Performance Monitoring and Accountability/Action Survey datasets were analyzed, with 4422 women in 2014, 5113 in 2015, 5071 in 2016, 4927 in 2017, 4981 in 2018, and 6117 in 2019 included. Data analysis was conducted using Stata version 16.0 statistical software. Given the sample disproportionality, survey design considerations were taken into account by applying probability weights. The sample weight was utilized with weighting factors provided in the PMA data to address the complex survey design. The ‘svy’ Stata command was applied to consider the clustering effect before descriptive statistical analysis. The trend was examined based on selected characteristics, with the primary statistical parameter being the trend of modern contraceptive utilization. The trends of modern contraceptive utilization for each year from 2014 to 2019 were calculated. Then, logit-based decomposition analysis was used to identify the factors driving changes in modern contraceptive utilization. Statistical significance was determined at a P value of less than 0.05, and results were presented as decomposition coefficients and percentages. Additionally, we conducted data smoothing to predict the future trend of modern contraceptive utilization and did not visually observe a distinct trend. We explored different time-series models such as linear, quadratic, exponential, and exponential smoothing. The results showed that the exponential smoothing trend model provided the most accurate fit, with the lowest standard error of estimate, sum square error, and highest adjusted R2 value. The modern contraceptive utilization trend increased from 32.5% in 2014 to 37% in 2019, with 5.94% and 94.06% attributed to changes in composition and behavior, respectively. Changes in composition were influenced by factors such as women’s age, marital status, education level, community lifestyle, and number of children. Meanwhile, changes in behavior among educated women, those aged 35-49, with a certain number of children, and living an agrarian lifestyle contributed to the change in modern contraceptive use. The most significant increase in modern contraceptive methods mix during this timeframe was noted in the adoption of implants. The future trend in modern contraceptive use can be described by the formula: modern contraceptive utilization = 32.5 + 1.3 (coded year) – 0.099 (squared coded year), with an adjusted R2 value of 0.99 and a P value of 0.027. It suggests that the exponential smoothing trend can explain nearly 99% of the variation in modern contraceptive utilization. Over the past 6 years, population composition and behavior changes have driven a noticeable increase in modern contraceptive utilization. In Ethiopia, it is essential to target interventions toward advancing-age women, those women with no children, and women belonging to pastoralist communities to enhance contraceptive utilization rates further. Further, focusing on behavioral interventions and education to increase modern contraceptive use rather than solely targeting demographic changes is imperative.

PMID:40181136 | DOI:10.1038/s41598-025-96394-9