Tag: nevin manimala

J Am Chem Soc. 2022 May 4. doi: 10.1021/jacs.2c02456. Online ahead of print.

ABSTRACT

This manuscript introduces geometry as a means to program the tile-based DNA self-assembly in two and three dimensions. This strategy complements the sequence-focused programmable assembly. DNA crystal assembly critically relies on intermotif, sticky-end cohesion, which requires complementarity not only in sequence but also in geometry. For DNA motifs to assemble into crystals, they must be associated with each other in the proper geometry and orientation to ensure that geometric hindrance does not prevent sticky ends from associating. For DNA motifs with exactly the same pair of sticky-end sequences, by adjusting the length (thus, helical twisting phase) of the motif branches, it is possible to program the assembly of these distinct motifs to either mix with one another, to self-sort and consequently separate from one another, or to be alternatingly arranged. We demonstrate the ability to program homogeneous crystals, DNA “alloy” crystals, and definable grain boundaries through self-assembly. We believe that the integration of this strategy and conventional sequence-focused assembly strategy could further expand the programming versatility of DNA self-assembly.

PMID:35507317 | DOI:10.1021/jacs.2c02456

Methods Mol Biol. 2022;2449:263-280. doi: 10.1007/978-1-0716-2095-3_11.

ABSTRACT

The multilevel organization of nature is self-evident: proteins do interact among them to give rise to an organized metabolism and the same hierarchical organization is in action for gene expression, tissue and organ architectures, and ecological systems.The still more common approach to such state of affairs is to think that causally relevant events originate from the lower level in the form of perturbations, that climb up the hierarchy reaching the ultimate layer of macroscopic behavior (e.g., causing a specific disease). Such rigid bottom-up causative model is unable to offer realistic models of many biological phenomena.Complex network approach allows to uncover the nature of multilevel organization, but in order to operationally define the organization principles of biological systems, we need to go further and complement network approach with sensible measures of order and organization. These measures, while keeping their original physical meaning, must not impose theoretical premises not verifiable in biological frameworks. We will show here how relatively simple and largely hypothesis-free multidimensional statistics tools can satisfactorily meet these criteria.

PMID:35507267 | DOI:10.1007/978-1-0716-2095-3_11

J Ultrasound. 2022 May 4. doi: 10.1007/s40477-022-00674-3. Online ahead of print.

ABSTRACT

AIMS: lymphadenopathy can occur after COVID-19 vaccination and when encountered at ultrasound examinations performed for other reasons might pose a diagnostic challenge. Purpose of the study was to evaluate the incidence, course and ultrasound imaging features of vaccine-induced lymphadenopathy.

METHODS: 89 healthy volunteers (median age 30, 76 females) were prospectively enrolled. Vaccine-related clinical side effects (e.g., fever, fatigue, palpable or painful lymphadenopathy) were recorded. Participants underwent bilateral axillary, supraclavicular and cervical lymph node stations ultrasound 1-4 weeks after the second dose and then again after 4-12 weeks in those who showed lymphadenopathy at the first ultrasound. B-mode, color-Doppler assessment, and shear-wave elastography (SWE) evaluation were performed. The correlation between lymphadenopathy and vaccine-related side effects was assessed using the Fisher’s exact test.

RESULTS: Post-vaccine lymphadenopathy were found in 69/89 (78%) participants (37 single and 32 multiple lymphadenopathy). Among them, 60 presented vaccine-related side effects, but no statistically significant difference was observed between post-vaccine side effect and lymphadenopathy. Ultrasound features of vaccine-related lymphadenopathy consisted of absence of fatty hilum, round shape and diffuse or asymmetric cortical thickness (median cortical thickness of 5 mm). Vascular signal was mainly found to be increased, localized in both central and peripheral regions. SWE showed a soft cortical consistence in all cases (median value 11 Kpa). At follow-up, lymph-node morphology was completely restored in most cases (54/69, 78%) and in no case lymphadenopathy had worsened.

CONCLUSION: A high incidence of vaccine-induced lymphadenopathy was found in a population of healthy subjects, with nearly complete regression within 4-12 weeks.

PMID:35507248 | DOI:10.1007/s40477-022-00674-3

Ann Biomed Eng. 2022 May 4. doi: 10.1007/s10439-022-02974-5. Online ahead of print.

ABSTRACT

The relationship between head impact and subsequent brain injury for American football players is not well-defined, especially for youth. The objective of this study is to quantify and assess Head Impact Exposure (HIE) metrics among youth and collegiate football players. This multi-season study enrolled 639 unique athletes (354 collegiate; 285 youth, ages 9-14), recording 476,209 head impacts (367,337 collegiate; 108,872 youth) over 971 sessions (480 collegiate; 491 youth). Youth players experienced 43 and 65% fewer impacts per competition and practice, respectively, and lower impact magnitudes compared to collegiate players (95th percentile peak linear acceleration (PLA, g) competition: 45.6 vs 61.9; 95th percentile PLA practice: 42.6 vs 58.8; 95th percentile peak rotational acceleration (PRA, rad·s^-2) competition: 2262 vs 4422; 95th percentile PRA practice: 2081 vs 4052; 95th percentile HITsp competition: 25.4 vs 32.8; 95th percentile HITsp practice: 23.9 vs 30.2). Impacts during competition were more frequent and of greater magnitude than during practice at both levels. Quantified comparisons of head impact frequency and magnitude between youth and collegiate athletes reveal HIE differences as a function of age, and expanded insight better informs the development of age-appropriate guidelines for helmet design, prevention measures, standardized testing, brain injury diagnosis, and recovery management.

PMID:35507229 | DOI:10.1007/s10439-022-02974-5

Environ Sci Pollut Res Int. 2022 May 4. doi: 10.1007/s11356-022-20460-2. Online ahead of print.

ABSTRACT

The focus of this study is to evaluate the influence of intertropical discontinuity (ITD) on the variation of total column ozone (TCO). Relevant information is supplied on the temporal and spatial variability of TCO along the ITD zone, which is an important factor influencing the earth’s atmosphere. Several studies over the years have established the relationship and have influence several atmospheric processes on TCO. However, the relationship between intertropical discontinuity and TCO over West Africa has a gap. This study tends to examine the influence ITD has on TCO variation using the West African region as a case study. The study used wind, ozone, and dewpoint temperature data for the period between 1980 and 2019. To assess the variability and trend over the study region, several statistical methods were used, including Pearson correlation, Mann-Kendall, and linear regression model. The Mann-Kendall test shows an increasing trend throughout the months over the study region. Spatial analysis also revealed that regions north of the ITD have a higher concentration of TCO than the southern region of the ITD between April and September. However, ITD influence was more visible during the wet months of June to August (JJA) as the highest concentration of TCO was observed during this period across all latitude, but more deviation was observed between latitude 10 to 18° N, while the least occurrence is observed when ITD is at its minimum position in the month of December to February (DJF). The ACRV shows that 14° N exhibit the highest variation with a value of 4.84, while the deviation is also at its highest with value of 13.65. The monthly position of ITD for 40 years was also analysed to observe the monthly deviation along the ITD region 40 years, and the spatial distribution of TCO was analysed from January to December. It is of note that during the cause of this study, low-ozone values of 220DU are not found in the study region. The highest and the lowest value of TCO is 295 DU and 227 DU, respectively, with an average range of 68DU.

PMID:35507220 | DOI:10.1007/s11356-022-20460-2

Environ Sci Pollut Res Int. 2022 May 4. doi: 10.1007/s11356-022-20363-2. Online ahead of print.

ABSTRACT

The genotoxicity of biogenic silver nanoparticles (AgNPs) obtained from three microbial mediators was assessed using the Allium cepa assay. Three clusters were differentiated for the highest frequency of end points of clastogenicity (stick-ends, fragments and bridges), end points of missegregation (C-metaphases and disorder anaphases), and lowest frequency of all the end points. In these clusters, the treatments were grouped respectively as I) positive control (GSF); II) silver nanoparticles form Aspergillus niger (AgNPs-An); and III) silver nanoparticles from both Cryptococcus laurentii (AgNPs-Cl) and Rhodotorula glutinis (AgNPs-Rg), Ag + , and negative control (NC). These results were in according to the principal component analisys (PCA) where treatments were associated to each component of the genotoxic effects. The statistical comparative analysis of the mitotic index (IM) and the abnormal mitosis frequency (AM) indicated that both GSF and AgNPsAn induce significant genotoxic effect. Low genotoxic effects were attributed to AgNPs-Cl and AgNPs-Rg, but mitogenic stimuli, similar to that obtained by the silver ions Ag + , were observed. Results suggested that different features of biogenic nanoparticles such as composition, size, and coating may be involved in the different cytological responses of the meristematic cells.

PMID:35507223 | DOI:10.1007/s11356-022-20363-2

Biol Trace Elem Res. 2022 May 4. doi: 10.1007/s12011-022-03196-5. Online ahead of print.

ABSTRACT

The traceability of different cultivation modes is critical for ensuring the commercial viability of high-value Dendrobium officinale. In this study, by means of polarizing microscopy, SEM-EDX, ICP-MS and ICP-AES, the possibility of combining microscopic characteristics, multielemental analysis and multivariate statistical authenticity analysis was realized to determine the origins of the fresh stem and dried stem powder of D. officinale derived from three different cultivation modes from six provinces of China. The microscopic structure, chemical elements on the surface of the main microstructures and concentrations of Ca, K, Ba, Cs, As and Cu varied among specimens derived from different cultivation modes. The fresh stems of D. officinale derived from different cultivation modes can be effectively and quickly identified by various microscopic characteristics and different contents of Ca on the surface of the parenchyma, phloem and xylem. Meanwhile, linear discriminant analysis showed that 98.1% of the dried stem powder samples were correctly classified, and the accuracy of cross-validation was 95.3%. This study facilitated an effective integrated method for determining the traceability of the fresh stem and dried stem powder of D. officinale derived from three different cultivation modes. This approach offers a potential method for identifying the origins of medicinal plants derived from different cultivation modes.

PMID:35507137 | DOI:10.1007/s12011-022-03196-5

Environ Manage. 2022 May 4. doi: 10.1007/s00267-022-01648-1. Online ahead of print.

ABSTRACT

There has been considerable brownfield development in the UK since 2000 due to increasing demand for new housing, combined with local opposition to building on greenbelt land. To facilitate this, extensive site investigations have been carried out and the reports submitted to local government as part of the planning process. This research investigates whether this largely untapped resource of site investigation data can be used to improve understanding of potentially toxic elements (PTE) and persistent organic pollutants (POP) at a local scale. The PTE/POP data were extracted from 1707 soil samples across 120 brownfield sites in an urban/suburban region. The samples were analysed to determine the effect of site location, historical use and site age on PTE/POP concentrations. Box plots indicating statistical results together with GIS maps of PTE/POP sample data provided the optimal visualisation of results. The dataset was shown to be a valuable resource, although further exploitation would be enhanced by digitisation of the submitted data. The paper explores potential applications of this data, including background concentrations and anthropogenic enrichment factors for PTE/POP. The results were summarised in a table for the PTE/POP and a preliminary risk assessment process chart to inform developers/regulators on potential PTE/POP levels on brownfield sites on a local scale. This information could focus design and resources for developers for site investigations and risk assessments and improve planning and regulatory guidance. The lack of predictability in PTE/POP results across sites have emphasised the ongoing need for intrusive site investigation on new brownfield developments.

PMID:35507107 | DOI:10.1007/s00267-022-01648-1

Rheumatol Int. 2022 May 4. doi: 10.1007/s00296-022-05120-5. Online ahead of print.

ABSTRACT

The primary aim of this study was to verify if shear wave elastography can be used to evaluate salivary gland involvement in primary Sjögren’s syndrome (pSS). The secondary objective was to establish an accurate cut-off value for parotid and submandibular salivary gland stiffness and to verify whether there are any distinctions among pSS patients with or without subjective mouth dryness. This prospective study included 45 patients with pSS (2016 ACR/EULAR classification criteria) and 108 healthy controls. All subjects underwent bilateral shear wave elastography of the parotid and submandibular salivary glands. Clinical data of pSS patients were collected and compared to elastography results. Patients with pSS had significantly higher shear wave elastography values for the parotid and submandibular salivary glands than the controls. There were no statistical differences in SWE values between patients with or without mouth dryness. The optimal cut-off value (mean value of 4 salivary glands shear wave elastography results) to distinguish patients with or without pSS was 13.19 kPa with sensitivity = 97.8% and specificity = 100.0%. It was, therefore, confirmed that shear wave elastography measurement of salivary glands has strong predictive ability in pSS detection (AUC 97.8%, 95% CI 93.4-100.0%). Shear wave elastography seems to be a promising, non-invasive and simple quantitative adjunct test to support the diagnosis of pSS with good sensitivity and specificity. More extensive prospective studies are needed to standardize a study protocol.

PMID:35507104 | DOI:10.1007/s00296-022-05120-5

Bull Math Biol. 2022 May 4;84(6):63. doi: 10.1007/s11538-022-01020-8.

ABSTRACT

We extended a class of coupled PDE-ODE models for studying the spatial spread of airborne diseases by incorporating human mobility. Human populations are modeled with patches, and a Lagrangian perspective is used to keep track of individuals’ places of residence. The movement of pathogens in the air is modeled with linear diffusion and coupled to the SIR dynamics of each human population through an integral of the density of pathogens around the population patches. In the limit of fast diffusion pathogens, the method of matched asymptotic analysis is used to reduce the coupled PDE-ODE model to a nonlinear system of ODEs for the average density of pathogens in the air. The reduced system of ODEs is used to derive the basic reproduction number and the final size relation for the model. Numerical simulations of the full PDE-ODE model and the reduced system of ODEs are used to assess the impact of human mobility, together with the diffusion of pathogens on the dynamics of the disease. Results from the two models are consistent and show that human mobility significantly affects disease dynamics. In addition, we show that an increase in the diffusion rate of pathogen leads to a lower epidemic.

PMID:35507091 | DOI:10.1007/s11538-022-01020-8