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Nevin Manimala Statistics

Extreme low pH, not Al3+ is a key abiotic stressor for the formation of extremophyte (Carex angustisquama, Cyperaceae) in highly acidic solfatara fields

Plant Biol (Stuttg). 2023 Feb 24. doi: 10.1111/plb.13514. Online ahead of print.

ABSTRACT

Volcanic acidification creates extreme soil conditions, where rhizotoxicity of extremely low pH (2-3) and high Al3+ strongly inhibit plant growth. Carex angustisquama is a dominant extremophyte in highly acidic solfatara fields, where no other vascular plants can survive, and here we investigated the key abiotic stressor determining the survivorship of this extremophyte. Soil analyses and topographical surveys were conducted to examine the effects of low pH and Al3+ , two major abiotic stressors in acidic soils, on the occurrence of C. angustisquama in solfatara fields. Hydroponic culture experiments were also performed to test its growth responses to these stressors. In the field surveys, the spatial distribution of soil pH was consistent with vegetation zonation within a solfatara field. In contrast, soil exchangeable Al content was overall low due to strong eluviation. Statistical analysis also supported the significant role of soil pH in determining the distribution of C. angustisquama in a solfatara field. Furthermore, hydroponic culture experiments revealed a higher tolerance of C. angustisquama to low pH than the sister species, especially in the range of pH 2-3, corresponding with the pH values of the actual habitats of C. angustisquama. Conversely, no significant interspecific difference was detected in Al3+ tolerance, indicating that both species had a high Al3+ tolerance. The study suggested that low pH is a critical abiotic stressor leading to the formation of the extremophyte in highly acidic solfatara fields. In contrast, C. angustisquama displayed high tolerance to Al3+ toxicity, probably acquired prior to speciation.

PMID:36825368 | DOI:10.1111/plb.13514

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Nevin Manimala Statistics

Research Letters: Risk of severe disease and mortality of COVID-19 in patients with Budd-Chiari syndrome: A Population-Based Matched Cohort Study

Liver Int. 2023 Feb 24. doi: 10.1111/liv.15553. Online ahead of print.

ABSTRACT

Budd-Chiari syndrome (BCS) is a rare and potentially life-threatening disorder characterized by obstruction of the hepatic outflow tract. It is unknown whether patients with BCS represent a high risk for severe disease and mortality from coronavirus disease 2019 (COVID-19). Thus, we aimed to assess hospitalization rates, severe disease, all-cause mortality, intensive care unit (ICU) requirement, and acute kidney injury (AKI) from COVID-19 diagnoses. We identified 467 patients with BCS with COVID-19, 96427 non-chronic liver disease (CLD), and 9652 non-BCS CLD. The BCS and non-CLD cohorts (n= 467 each) and BCS and non-BCS CLD (n=440 each) were well balanced after propensity matching. When compared to the non-CLD cohort, the BCS group had a higher risk of all-cause mortality (5.1% vs. 2.4%, HR 2.18; 95% CI, 1.08-4.40), severe disease (6.0% vs. 2.4%, HR 2.20; 95% CI, 1.09-4.43), hospitalization (24.6% vs. 13.1%, HR 1.77; 95% CI, 1.30-2.42), and AKI (7.9% vs. 2.8%, HR 2.57; 95% CI, 1.37-4.85), but no significant differences in ICU requirements (2.4% vs. 2.1%, HR 0.75; 95% CI, 0.27-2.08) at 60-days time points. When compared to the non-BCS CLD cohort, the BCS group had a higher risk of all-cause mortality (3.6% vs. 2.5%, HR 3.94; 95% CI, 1.31-11.79), hospitalization (29.8% vs. 21.6%, HR 1.43; 95% CI, 1.09-1.86), but differences in ICU requirements (HR 0.90 (0.38-2.12)), AKI (HR 1.41 (0.86-2.30)) or severe disease (HR 1.92 (0.99-3.71)) did not reach statistical significance at 60-day follow up. In conclusion, COVID-19 infection in patients with BCS is associated with poor outcomes. Patients with BCS infected with COVID-19 carry a significantly higher risk of hospitalization and all-cause mortality and a possible effect on severe disease and AKI compared with COVID-19 patients without CLD or with non-BCS-CLD.

PMID:36825357 | DOI:10.1111/liv.15553

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Nevin Manimala Statistics

Effectiveness of prophylactic carbetocin versus oxytocin following vaginal delivery for preventing severe postpartum hemorrhage

Int J Gynaecol Obstet. 2023 Feb 23. doi: 10.1002/ijgo.14743. Online ahead of print.

ABSTRACT

OBJECTIVE: To compare the effectiveness of prophylactic carbetocin with prophylactic oxytocin for preventing severe postpartum hemorrhage (PPH) following vaginal delivery.

METHODS: This before-and-after cohort study took place between 2020-2021 in a university maternity hospital. In 2021, protocol for PPH prevention immediately after vaginal delivery changed: oxytocin (5IU)IV was replaced by carbetocin (100μg)IV. All patients with vaginal births were included, with two groups compared: patients who received prophylactic oxytocin in 2020 and those who received prophylactic carbetocin in 2021. The primary outcome was severe PPH, defined as one or more of the following: estimated blood loss ≥ 1500 mL, transfusion≥4 units of red blood cells, Bakri balloon use, embolization, vascular ligation, hysterectomy, maternal death.

RESULTS: Among 4832 women included: 2417 received oxytocin and 2415 carbetocin. The rate of severe PPH was similar in both groups (0.5% vs 0.6%; aOR 0.8; 95% CI 0.4-1.8). The rate of PPH ≥ 500 mL was lower in the carbetocin group (4% versus 5.8%; P = 0.004).

CONCLUSION: Although prophylactic carbetocin was associated with a reduction in the rate of PPH ≥ 500 mL, carbotocin is non-inferiors to oxytocine at preventing severe post-partum hemorrhage due atony after vaginal delivery.

PMID:36825331 | DOI:10.1002/ijgo.14743

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Nevin Manimala Statistics

Cohort size required for prognostic genes analysis of stage II/III esophageal squamous cell carcinoma

Pathol Oncol Res. 2023 Feb 7;29:1610909. doi: 10.3389/pore.2023.1610909. eCollection 2023.

ABSTRACT

Background: Few overlaps between prognostic biomarkers are observed among different independently performed genomic studies of esophageal squamous cell carcinoma (ESCC). One of the reasons for this is the insufficient cohort size. How many cases are needed to prognostic genes analysis in ESCC? Methods: Here, based on 387 stage II/III ESCC cases analyzed by whole-genome sequencing from one single center, effects of cohort size on prognostic genes analysis were investigated. Prognostic genes analysis was performed in 100 replicates at each cohort size level using a random resampling method. Results: The number of prognostic genes followed a power-law increase with cohort size in ESCC patients with stage II and stage III, with exponents of 2.27 and 2.25, respectively. Power-law curves with increasing events number were also observed in stage II and III ESCC, respectively, and they almost overlapped. The probability of obtaining statistically significant prognostic genes shows a logistic cumulative distribution function with respect to cohort size. To achieve a 100% probability of obtaining statistically significant prognostic genes, the minimum cohort sizes required in stage II and III ESCC were approximately 95 and 60, respectively, corresponding to a number of outcome events of 33 and 36, respectively. Conclusion: In summary, the number of prognostic genes follows a power-law growth with the cohort size or events number in ESCC. The minimum events number required to achieve a 100% probability of obtaining a statistically significant prognostic gene is approximately 35.

PMID:36825282 | PMC:PMC9941191 | DOI:10.3389/pore.2023.1610909

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Nevin Manimala Statistics

No evidence for spatial suppression due to across-trial distractor learning in visual search

Atten Percept Psychophys. 2023 Feb 23. doi: 10.3758/s13414-023-02667-8. Online ahead of print.

ABSTRACT

Previous studies have shown that during visual search, participants are able to implicitly learn across-trial regularities regarding target locations and use these to improve search performance. The present study asks whether such across-trial visual statistical learning also extends to the location of salient distractors. In Experiments 1 and 2, distractor regularities were paired so that a specific distractor location was 100% predictive of another specific distractor location on the next trial. Unlike previous findings that employed target regularities, the current results show no difference in search times between predictable and unpredictable trials. In Experiments 3-5 the distractor location was presented in a structured order (a sequence) for one group of participants, while it was presented randomly for the other group. Again, there was no learning effect of the across-trial regularities regarding the salient distractor locations. Across five experiments, we demonstrated that participants were unable to exploit across-trial spatial regularities regarding the salient distractors. These findings point to important boundary conditions for the modulation of visual attention by statistical regularities and they highlight the need to differentiate between different types of statistical regularities.

PMID:36823261 | DOI:10.3758/s13414-023-02667-8

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Nevin Manimala Statistics

Visual search and childhood vision impairment: A GAMLSS-oriented multiverse analysis approach

Atten Percept Psychophys. 2023 Feb 23. doi: 10.3758/s13414-023-02670-z. Online ahead of print.

ABSTRACT

The aim of this report was to analyze reaction times and accuracy in children with a vision impairment performing a feature-based visual search task using a multiverse statistical approach. The search task consisted of set sizes 4, 16, and 24, consisting of distractors (circle) and a target (ellipse) that were presented randomly to school-aged individuals with or without a vision impairment. Interactions and main effects of key variables relating to reaction times and accuracy were analyzed via a novel statistical method blending GAMLSS (generalized additive models for location, scale, and shape) and distributional regression trees. Reaction times for the target-present and target-absent conditions were significantly slower in the vision impairment group with increasing set sizes (p < .001). Female participants were significantly slower than were males for set sizes 16 and 24 in the target-absent condition (p < .001), with male participants being significantly slower than females in the target-present condition (p < .001). Accuracy was only significantly worse (p = .03) for participants less than 14 years of age for the target-absent condition with set sizes 16 and 24. There was a positive association between binocular visual acuity and search time (p < .001). The application of GAMLSS with distributional regression trees to the analysis of visual search data may provide further insights into underlying factors affecting search performance in case-control studies where psychological or physical differences may influence visual search outcomes.

PMID:36823260 | DOI:10.3758/s13414-023-02670-z

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Nevin Manimala Statistics

Risk factors for the intergenerational transmission of depression in women and girls: Understanding neural correlates of major depressive disorder and the role of early-onset maternal depression

Cogn Affect Behav Neurosci. 2023 Feb 23. doi: 10.3758/s13415-023-01063-x. Online ahead of print.

ABSTRACT

Deficits in neural reward processing have been implicated in the etiology of depression and have been observed in high-risk individuals. However, depression is a heterogeneous disorder, and not all depressed individuals exhibit blunted neural reward response, suggesting the need to examine more specific depression phenotypes. Early-onset depression, a well-defined phenotype, has been associated with greater intergenerational transmission of depression and appears more closely linked to neural reward processing deficits. The present study examined whether a maternal history of early-onset depression was associated with neural reward response among mothers and their daughters. Mothers with and without a history of depression, as well as their biological, adolescent daughters (N = 109 dyads), completed a monetary reward guessing task while electroencephalogram was collected. Analyses focused on the Reward Positivity (RewP), an event-related potential following reward receipt. Adjusting for current depressive symptoms, maternal early-onset depression was associated with a blunted RewP in the mothers and a numerically smaller RewP in their never-depressed, adolescent daughters. Maternal adult-onset depression was not statistically associated with a blunted RewP in mothers or daughters. Thus, a blunted RewP appears to be a trait-like vulnerability marker for depression that emerges before depression onset and relates to more specific depression phenotypes (e.g., early-onset depression). These findings have implications for early identification of individuals at risk of depression and for developing more targeted interventions.

PMID:36823246 | DOI:10.3758/s13415-023-01063-x

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Nevin Manimala Statistics

Impact of reboxetine plus oxybutynin treatment for obstructive sleep apnea on cardiovascular autonomic modulation

Sci Rep. 2023 Feb 23;13(1):3178. doi: 10.1038/s41598-023-29436-9.

ABSTRACT

The combination of noradrenergic (reboxetine) plus antimuscarinic (oxybutynin) drugs (reb-oxy) reduced obstructive sleep apnea (OSA) severity but no data are available on its effects on cardiac autonomic modulation. We sought to evaluate the impact of 1-week reb-oxy treatment on cardiovascular autonomic control in OSA patients. OSA patients were randomized to a double-blind, crossover trial comparing 4 mg reboxetine plus 5 mg oxybutynin to a placebo for OSA treatment. Heart rate (HR) variability (HRV), ambulatory blood pressure (BP) monitoring (ABPM) over 24 h baseline and after treatment were performed. Baroreflex sensitivity was tested over beat-to-beat BP recordings. 16 subjects with (median [interquartile range]) age 57 [51-61] years and body mass index 30 [26-36]kg/m2 completed the study. The median nocturnal HR was 65 [60-69] bpm at baseline and increased to 69 [64-77] bpm on reb-oxy vs 66 [59-70] bpm on placebo (p = 0.02). The mean 24 h HR from ABPM was not different among treatment groups. Reb-oxy administration was not associated with any modification in HRV or BP. Reb-oxy increased the baroreflex sensitivity and did not induce orthostatic hypotension. In conclusion, administration of reb-oxy did not induce clinically relevant sympathetic overactivity over 1-week and, together with a reduction in OSA severity, it improved the baroreflex function.

PMID:36823241 | DOI:10.1038/s41598-023-29436-9

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Nevin Manimala Statistics

The effect of a brief, unplanned treatment delay on neovascular age-related macular degeneration patients: a retrospective cohort study

Sci Rep. 2023 Feb 23;13(1):3156. doi: 10.1038/s41598-023-29819-y.

ABSTRACT

Non-compliance to intravitreal anti-vascular endothelial growth factor (anti-VEGF) therapy can result in increased disease activity in neovascular age-related macular degeneration (nAMD). Our study aims to determine effects of unplanned delay in anti-VEGF injection treatment for nAMD. This retrospective observational study included patients with delays in receiving intravitreal injections for nAMD treatment from March to May 2020 by at least 21 days. Baseline demographic and clinical characteristics, visual acuity (VA), central macular thickness (CMT) measured on optical coherence tomography (OCT), and duration of delayed treatment were analyzed for 3 time points, the pre-delay visit (v1) and post-delay visits (v2 and v3). Data were compared to age-matched controls treated for nAMD in 2019 without delay. Demographic characteristics were compared using two-sample t-tests for continuous variables and Pearson’s chi-square tests for categorical variables. For the two primary outcomes of interest, VA and CMT, means and standard deviations were reported for each combination of group and time. Each outcome was modeled using a linear mixed model with the group, time and group-time interaction as fixed effects. A total of 69 patients (99 eyes) in the treatment delay group and 44 patients (69 eyes) in the control group were identified. Statistically significant differences between control and delayed groups were detected for VA (difference in mean logMAR = 0.16; 95% CI 0.06, 0.27; p = 0.002) and CMT (difference in mean CMT = 29; 95% CI 12, 47; p = 0.001) at v2. No differences were detected for v1 and v3 time points for both outcomes. An unplanned delay in intravitreal injection treatment for nAMD resulted in an increase in CMT and worsening of VA compared to controls observed at v2. At v3, CMT and VA recovered to near v1 levels. This study demonstrates that a one-time, brief interruption in treatment for nAMD results in reversible, temporary worsening.

PMID:36823223 | DOI:10.1038/s41598-023-29819-y

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Nevin Manimala Statistics

Investigating responses to object-labels in the domestic dog (Canis familiaris)

Sci Rep. 2023 Feb 23;13(1):3150. doi: 10.1038/s41598-023-30201-1.

ABSTRACT

Since the dawn of comparative cognitive research, dogs were suspected to possess some capacity for responding to human spoken language. Neuroimaging studies have supported the existence of relevant mechanisms, but convincing behavioral performance is rare, with only few exceptional dogs worldwide demonstrating a lexicon of object-labels they respond to. In the present study we aimed to investigate if and how a capacity for processing verbal stimuli is expressed in dogs (N = 20), whose alleged knowledge of verbal labels is only backed-up by owner reports taken at face value, and concerning only a few words (on average 5). Dogs were tested in a two-choice paradigm with familiar objects. The experiment was divided into a cue-control condition (objects visible to the owner vs. shielded by a panel, thereby controlling the owner’s ability to emit cues to the dog) and a response type condition (fetching vs. looking). Above chance performance in fetching and looking at the named object emerged on the level of the sample as a whole. Only one individual performed reliably above chance, but the group-level effect did not depend on this data point. The presence of the panel also had no influence, which supports that performance was not driven by non-verbal cues from the owners. The group-level effect suggests that in typical dogs object-label learning is an instable process, either due to the animals primarily engaging in contextual learning or possibly analogous to the early stages of implicit, statistical learning of words in humans and opposed to the rapid mapping reported in exceptional dogs with larger passive vocabulary.

PMID:36823218 | DOI:10.1038/s41598-023-30201-1