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Nevin Manimala Statistics

High speed visual insect swarm tracker (Hi-VISTA) used to identify the effects of confinement on individual insect flight

Bioinspir Biomim. 2022 Apr 19. doi: 10.1088/1748-3190/ac6849. Online ahead of print.

ABSTRACT

Individual insects flying in crowded assemblies perform complex aerial maneuvers by sensing and feeding back neighbor measurements to small changes in their wing motions. To understand the individual feedback rules that permit these fast, adaptive behaviors in group flight, both experimental preparations inducing crowded flight and high-speed tracking systems capable of tracking both body motions and more subtle wing motion changes for multiple insects in simultaneous flight are needed. This measurement capability extends tracking beyond the previous focus on individual insects to multiple insects. This paper describes an experimental preparation that induces crowded insect flight in more naturalistic conditions (a laboratory-outdoor transition tunnel) and directly compares the resulting flight performance to traditional flight enclosures. Measurements are made possible via the introduction of a multi-agent high speed insect tracker called Hi-VISTA, which provides a capability to track wing and body motions of multiple insects using high speed cameras (9000-12,500 fps). Processing steps consist of automatic background identification, data association, hull reconstruction, segmentation, and feature measurement. To improve the biological relevance of laboratory experiments and develop a platform for interaction studies, this paper applies the Hi-VISTA measurement system toApis melliferaforagers habituated to transit flights through the transparent transition environment. Binary statistical analysis (Welch’s t-test, Cohen’s d effect size) of 95 flight trajectories is presented, quantifying the differences between flights in an unobstructed environment and in a confined tunnel volume. The results indicate that body pitch angle, heading rate, flapping frequency, and vertical speed (heave) are each affected by confinement, and other flight variables show minor or statistically insignificant changes. These results form a baseline as swarm tracking and analysis begins to isolate the effects of neighbors from environmental enclosures, and improve the connection of high speed insect laboratory experiments to outdoor field experiments.

PMID:35439741 | DOI:10.1088/1748-3190/ac6849

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Nevin Manimala Statistics

Different perspectives in understanding muscle functions in Parkinson’s disease through surface electromyography: Exploring multiple activation patterns

J Electromyogr Kinesiol. 2022 Apr 12;64:102658. doi: 10.1016/j.jelekin.2022.102658. Online ahead of print.

ABSTRACT

Gait disorders are one of the cardinal features of Parkinson’s Disease (PD) and might be affected by a modified pattern of motor unit activation. This work explores how PD affects the lower limb muscle control and how muscle activity contributes to gait impairment. Using clinical gait analysis data, the onset and the offset of the surface electromyographic (sEMG) signal of four lower limb muscles were determined in 18 people with PD and compared with 10 heathy controls. Different motor patterns were identified in both the populations through a statistical detector algorithm and described in terms of linear envelope, local maxima activation magnitude and occurrence, co-contractions, and bursts duration. Statistical analysis was performed using statistical parametric mapping for the sEMG envelope and linear mixed effects models for the sEMG parameters. An equivalent number of sEMG patterns was detected in PD with respect to controls. Significant differences were highlighted between the two cohorts within the same activation modality. Plantarflexors muscles activation was delayed on time and had different durations and activations peaks, while Biceps Femoris revealed a higher local maximum. These results suggested that functional tibiotarsus joint reeducation coupled with postural rehabilitation might be beneficial for people with PD.

PMID:35439716 | DOI:10.1016/j.jelekin.2022.102658

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Nevin Manimala Statistics

Clinical features and recurrence factors of benign neoplasms of the tongue base

Oral Oncol. 2022 Apr 16;128:105866. doi: 10.1016/j.oraloncology.2022.105866. Online ahead of print.

ABSTRACT

INTRODUCTION: Neoplasms of the tongue base are rare, but they range from benign neoplasms to congenital diseases and malignant neoplasms. The purpose of this study is to analyze the clinical features and recurrence factors of benign tumors of the tongue base.

METHODS: The study included 27 cases of benign neoplasms of the tongue base from January 2010 to February 2022.

RESULTS: Of these 27 patients, 19 were male and 8 were female. Most cases were found incidentally without any specific symptoms, and squamous papilloma was the most common tumor. We performed microscopic or endoscopic transoral resection of benign neoplasms of the tongue base under general anesthesia in all patients without any complications. The recurrence rate was 14.8%, and we found that the younger the patient, the higher the recurrence rate (p < 0.001).

CONCLUSION: We performed transoral resection of benign neoplasms of the tongue base in all patients without any complications. The recurrence of benign neoplasms of the tongue base was statistically significant only in terms of age.

PMID:35439708 | DOI:10.1016/j.oraloncology.2022.105866

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Nevin Manimala Statistics

Immune response of booster doses of BBIBP-CORV vaccines against the variants of concern of SARS-CoV-2

J Clin Virol. 2022 Apr 12;150-151:105161. doi: 10.1016/j.jcv.2022.105161. Online ahead of print.

ABSTRACT

BACKGROUND: Booster doses for COVID-19 vaccinations are currently recommended and approved in many countries. However, we need more evidence on the immune response of individuals to booster doses of inactivated vaccines and the neutralizing effect against the variants of concerns of SARS-CoV-2.

OBJECTIVE: To compare the fold reduction in antibody titers against the variants of concerns of SARS-CoV-2 between the primary doses and booster dose vaccine cohorts of inactivated BBIBP-CorV vaccine.

STUDY DESIGN: In this observational study Plaque Reduction Neutralization Test (PRNT) assay was done on pooled serum samples of the recipients of primary two doses of inactivated BBIBP-CorV and on the pooled serum samples of recipients of a booster dose of inactive BBIBP-CorV. The neutralizing antibody titers against the wild (Wuhan) strain and the variants of concern (alpha, beta and delta) were compared.

RESULTS: The serum sample pool from the booster cohort had high neutralizing antibody titers against the SARS-CoV-2 variants compared to the pooled serum samples of the recipients of primary two doses of inactivated BBIBP-CorV and the difference was statistically significant. The observed fold reduction in antibody titers from the serum pool of recipients of two doses of BBIBP-CorV vaccine were 3.7-fold, 14.6-fold and 10.4-fold compared to 1.8 -fold, 6.5-fold and 3.8-fold reduction against the alpha, beta and delta lineages respectively in the serum pool of recipient of a booster dose (three doses of BBIBP-CorV).

CONCLUSION: Booster doses of inactive BBIBP-CORV offered better protection against the variants of concern of SARS-CoV-2.

PMID:35439702 | DOI:10.1016/j.jcv.2022.105161

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Nevin Manimala Statistics

Quantifying the emotional experiences of partners of veterans with PTSD service dogs using ecological momentary assessment

Complement Ther Clin Pract. 2022 Apr 12;48:101590. doi: 10.1016/j.ctcp.2022.101590. Online ahead of print.

ABSTRACT

The objective of this study was to investigate the day-to-day experiences of positive and negative emotions among partners of veterans assigned service dogs for posttraumatic stress disorder (PTSD). As part of a larger clinical trial, a total of N = 87 partners of post-9/11 veterans with PTSD were recruited from a nonprofit service dog provider and participated in an ecological momentary assessment (EMA) protocol. The sample included partners of veterans who received a PTSD service dog after baseline (n = 48, treatment group) and partners of veterans on the waitlist for a service dog (n = 39, control group). Data were collected twice daily for two weeks at baseline and again at follow-up three months later, for approximately 56 assessments per participant (28 at baseline, 28 at follow up). Participants completed an average of 84% of questionnaires at baseline (n = 23.6) and 86% (n = 24.1) at follow-up. A total of 3780 EMA questionnaires were collected among partners for this analysis. Data were analyzed using a generalized linear mixed model. Three months following baseline, partners of veterans with service dogs reported statistically significant higher levels of positive emotions than the control partners (p = .01, d = 0.39) with small-to-medium effect sizes for each individual positive emotion. No statistically significant differences were reported for negative emotions (p = .77, d = 0.21). This study quantitatively identifies higher levels of positive emotion in partners who are cohabitating with a PTSD service dog compared to those partners who remained on the waitlist. Given the influence that positive emotions have on well-being and coping, findings suggest that the influence of service dogs may go beyond veterans to influence their cohabitating partners.

PMID:35439705 | DOI:10.1016/j.ctcp.2022.101590

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Nevin Manimala Statistics

Compactness regularization in the analysis of dipolar EPR spectroscopy data

J Magn Reson. 2022 Apr 9;339:107218. doi: 10.1016/j.jmr.2022.107218. Online ahead of print.

ABSTRACT

Dipolar electron paramagnetic resonance (EPR) experiments, such as double electron-electron resonance (DEER), measure distributions of nanometer-scale distances between paramagnetic centers, which are valuable for structural characterization of proteins and other macromolecular systems. One challenge in the least-squares fitting analysis of dipolar EPR data is the separation of the inter-molecular contribution (background) and the intra-molecular contribution. For noisy experimental traces of insufficient length, this separation is not unique, leading to identifiability problems for the background model parameters and the long-distance region of the intra-molecular distance distribution. Here, we introduce a regularization approach that mitigates this by including an additional penalty term in the objective function that is proportional to the variance of the distance distribution and thereby penalizes non-compact distributions. We examine the reliability of this approach statistically on a large set of synthetic data and illustrate it with an experimental example. The results show that the introduction of compactness can improve identifiability.

PMID:35439683 | DOI:10.1016/j.jmr.2022.107218

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Nevin Manimala Statistics

Functional outcomes and complications in refractory dysthyroid optic neuropathy management: Experience with 3 different surgical protocols

Am J Otolaryngol. 2022 Apr 11;43(3):103451. doi: 10.1016/j.amjoto.2022.103451. Online ahead of print.

ABSTRACT

INTRODUCTION: Dysthyroid optic neuropathy (DON) is the most severe complication of Graves’ orbitopathy (GO) and its management may require decompression surgery. Clear recommendations do not exist about which surgery should be performed and how extended the decompression should be. In this paper we present our experience regarding the management of DON via 3 different surgical protocols: a modified extended orbital apex decompression, a 2 walls decompression (inferior and lateral) and a 3 walls decompression (inferior, lateral and medial) and evaluate the functional outcomes.

METHODS: Retrospective evaluation of subjects affected by DON not responding to medical therapy has been performed. All patients were submitted to pre- and post-operative ophthalmologic evaluations and orbital and sinuses CT scan in order to evaluate functional and surgical outcomes.

RESULTS: 27 patients were enrolled in the study. Surgical procedures were performed on 42 orbits. A statistically significant post-operative improvement was recorded in visual acuity, proptosis, color vision and fundus oculi evaluation for all groups. No patient developed major or minor complications after surgery.

CONCLUSIONS: Extended endonasal approach and 3 walls decompression have been proved effective in the management of DON. The choice between them is done according to degree of proptosis, general status and eye-surface damages.

PMID:35439657 | DOI:10.1016/j.amjoto.2022.103451

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Nevin Manimala Statistics

Seropositivity and neutralising antibodies at six months after BNT162b2 vaccination in patients with solid tumours

Eur J Cancer. 2022 Apr 16;168:51-55. doi: 10.1016/j.ejca.2022.03.013. Online ahead of print.

ABSTRACT

AIM: Patients with cancer are at an increased risk for severe coronavirus disease of 2019. We previously reported initial findings from a single centre prospective study evaluating antibody response after BNT162b2 vaccine, showing that adequate antibody response was achieved after two doses, but not after one, in patients with cancer vaccinated during anticancer therapy. Herein, we report a follow-up study, evaluating antibody response six months after the second vaccine dose.

METHODS: The study included patients with solid tumours undergoing anticancer treatment, and immunocompetent health-care workers serving as controls. Serum titres of the receptor-binding domain (RBD) IgG and neutralising antibodies (Nabs) were measured approximately six months after the second vaccine dose. Complete blood count values were collected and evaluated as predictors for antibody response.

RESULTS: The analysis included 93 patients with cancer (66.7% metastatic). Six months after the second vaccine dose (mean 176 ± 20 days), seropositivity rate among patients and controls was 83.9% versus 96.3% (p = 0.0001), respectively. Median RBD-IgG titre was lower among patients compared with controls (2.3 versus 3.2, p = 0.0002). Among seropositive individuals, median Nabs titre was similar between patients with cancer and controls (p = 0.566). Among patients with cancer, lymphocyte and neutrophil counts were not correlated with either RBD-IgG or Nabs titres.

CONCLUSIONS: Seropositivity rates and RBD-IgG titre at six months after second BNT162b2 vaccine dose are lower among patients with cancer compared with healthy controls. However, Nabs titre is similar, suggesting a comparable protection among seropositive individuals. Lymphocyte count is not predictive of antibody response.

PMID:35439660 | DOI:10.1016/j.ejca.2022.03.013

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Nevin Manimala Statistics

A parametric head geometry model accounting for variation among adolescent and young adult populations

Comput Methods Programs Biomed. 2022 Apr 10;220:106805. doi: 10.1016/j.cmpb.2022.106805. Online ahead of print.

ABSTRACT

BACKGROUND AND OBJECTIVE: Modeling the size and shape of human skull and scalp is essential for head injury assessment, design of helmets and head-borne equipment, and many other safety applications. Finite element (FE) head models are important tools to assess injury risks and design personal protective equipment. However, current FE head models are mainly developed based on the midsize male, failing to account for the significant morphological variation that exists in the skull and brain. The objective of this study was to develop a statistical head geometry model that accounts for size and shape variations among the adolescent and young adult population.

METHODS: To represent subject-specific geometry using a homologous mesh, threshold-based segmentation of head CT scans of 101 subjects between 14 and 25 years of age was performed, followed by landmarking, mesh morphing, and projection. Skull and scalp statistical geometry models were then developed as functions of age, sex, stature, BMI, head length, head breadth, and tragion-to-top of head using generalized Procrustes analysis (GPA), principal component analysis (PCA) and multivariate regression analysis.

RESULTS: The statistical geometry models account for a high percentage of morphological variations in scalp geometry (R2=0.63), outer skull geometry (R2=0.66), inner skull geometry (R2=0.55), and skull thickness (error < 1 mm) CONCLUSIONS: Skull and scalp statistical geometry models accounts for size and shape variations among the adolescent and young adult population were developed as functions of subject covariates. These models may serve as the geometric basis to develop individualized head FE models for injury assessment and design of head-borne equipment.

PMID:35439654 | DOI:10.1016/j.cmpb.2022.106805

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Nevin Manimala Statistics

Can patient-led surveillance detect subsequent new primary or recurrent melanomas and reduce the need for routinely scheduled follow up? Statistical analysis plan for the MEL-SELF randomised controlled trial

Contemp Clin Trials. 2022 Apr 16:106761. doi: 10.1016/j.cct.2022.106761. Online ahead of print.

ABSTRACT

BACKGROUND: The MEL-SELF trial is a randomised controlled trial of patient-led surveillance compared to clinician-led surveillance in people treated for localised cutaneous melanoma (stage 0, I, II). The primary trial aim is to determine if patient led-surveillance compared to clinician-led surveillance increases the proportion of participants who are diagnosed with a new primary or recurrent melanoma at a fast-tracked unscheduled clinic visit. The secondary outcomes include time to diagnosis of any skin cancer, psychosocial outcomes, acceptability, and resource use.

OBJECTIVE: The objective of this report is to outline and publish the pre-determined statistical analysis plan before the database lock and the start of analysis.

METHODS/DESIGN: The statistical analysis plan describes the overall analysis principles, including how participants will be included in each analysis, the presentation of the results, adjustments for covariates, the primary and secondary outcomes, and their respective analyses. In addition, we present the planned sensitivity and subgroup analyses. A separate analysis plan will be published for health economic outcomes.

RESULTS: The MEL-SELF statistical analysis plan has been designed to minimize bias in estimating effects of the intervention on primary and secondary outcomes. By pre-specifying analyses, we ensure the study’s integrity and believability while enabling the reproducibility of the final analysis.

CONCLUSION: This detailed statistical analysis plan will help to ensure transparency of reporting of results from the MEL-SELF trial.

TRIAL REGISTRATION: Australian New Zealand Clinical Trials Registry (ANZCTR): ACTRN12621000176864. Registered 18 February 2021, https://www.anzctr.org.au/ACTRN12621000176864.aspx.

PMID:35439647 | DOI:10.1016/j.cct.2022.106761