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Nevin Manimala Statistics

Structural variation in nebulin and its impact on phenotype and inheritance: establishing a dominant distal phenotype caused by large deletions

Eur J Hum Genet. 2025 Jun 14. doi: 10.1038/s41431-025-01891-0. Online ahead of print.

ABSTRACT

Structural variants (SVs) of the nebulin gene (NEB), including intragenic duplications, deletions, and copy number variation of the triplicate region, are an established cause of recessively inherited nemaline myopathies and related neuromuscular disorders. Large deletions have been shown to cause dominantly inherited distal myopathies. Here we provide an overview of 35 families with muscle disorders caused by such SVs in NEB. Using custom Comparative Genomic Hybridization arrays, exome sequencing, short-read genome sequencing, custom Droplet Digital PCR, or Sanger sequencing, we identified pathogenic SVs in 35 families with NEB-related myopathies. In 23 families, recessive intragenic deletions and duplications or pathogenic gains of the triplicate region segregating with the disease in compound heterozygous form, together with a small variant in trans, were identified. In two families the SV was, however, homozygous. Eight of these families have not been described previously. In 12 families with a distal myopathy phenotype (of which 10 are previously unpublished), eight unique, large deletions encompassing 52-97 exons in either heterozygous (n = 10) or mosaic (n = 2) state were identified. In the families where inheritance was recessive, no correlation could be made between the types of variants and the severity of the disease. In contrast, all patients with large dominant deletions in NEB had milder, predominantly distal muscle weakness. For the first time, we establish a clear and statistically significant association between large NEB deletions and a form of distal myopathy. In addition, we provide the hitherto largest overview of the spectrum of SVs in NEB.

PMID:40517164 | DOI:10.1038/s41431-025-01891-0

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The importance of the bow and lean test as an initial positional test for diagnosing BPPV

Eur Arch Otorhinolaryngol. 2025 Jun 14. doi: 10.1007/s00405-025-09512-8. Online ahead of print.

ABSTRACT

PURPOSE: This study aimed to evaluate the diagnostic potential of nystagmus direction observed during bow and lean tests (BLTs) in patients with posterior canal canalolithiasis BPPV (P-BPPV), lateral canal canalolithiasis BPPV (Lca-BPPV), and lateral canal cupulolithiasis BPPV (Lcu-BPPV).

METHODS: A total of 62 patients (40 women, 22 men; aged 24-70 years) with clinically suspected BPPV were enrolled. Diagnoses included 39 cases of P-BPPV, 15 of Lca-BPPV, and 8 of Lcu-BPPV. Each participant underwent the Dix-Hallpike Test (DH), Head Roll Test (HRT), and bow and lean tests for diagnostic assessment. The primary outcome was the presence and direction of nystagmus during BLTs, in relation to BPPV subtype.

RESULTS: Nystagmus was detected in 77.4% of subjects during the bow test and in 46.8% during the lean test. A statistically significant difference was found in nystagmus direction across BPPV subtypes (p < 0.05). Right-beating horizontal nystagmus during the bow test was significantly more frequent in right-sided Lca-BPPV. Right down-beating torsional nystagmus during the bow test occurred exclusively in left P-BPPV, while left down-beating torsional nystagmus was seen only in right P-BPPV. Right up-beating torsional nystagmus was significantly associated with right P-BPPV, and left up-beating torsional nystagmus with left P-BPPV (p < 0.05).

CONCLUSIONS: In P-BPPV, DH-induced nystagmus direction was opposite in the bow position but matched in the lean position. These findings underscore the diagnostic value of BLTs, particularly the bow test, in identifying the affected canal in posterior and lateral canal BPPV.

PMID:40517160 | DOI:10.1007/s00405-025-09512-8

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Effects of platelet-rich fibrin on outcomes following mandibular third molar removal: a randomized controlled clinical trial

Int J Oral Maxillofac Surg. 2025 Jun 13:S0901-5027(25)01327-X. doi: 10.1016/j.ijom.2025.06.007. Online ahead of print.

ABSTRACT

Surgical removal of mandibular third molars is a routine procedure in oral and maxillofacial surgery, often followed by pain, swelling, trismus, and alveolar osteitis (AO), affecting patient comfort and daily function. Platelet-rich fibrin (PRF) is an autologous biomaterial that promotes healing through the gradual release of cytokines and growth factors. This prospective, randomized, controlled, and patient-blinded study investigated whether PRF applied to the extraction socket reduces postoperative symptoms and complications. Ninety patients scheduled for mandibular third molar removal were randomized to receive PRF or no adjunct treatment prior to wound closure. Seventy-five patients completed follow-up and were included in the analysis. Postoperative outcomes including AO, infection, pain, trismus, analgesic use, and sick leave were recorded over 10 days. The incidence of AO was lower in the PRF group (3.0%) compared to the control group (11.9%), although the difference was not statistically significant. PRF treatment significantly reduced postoperative pain during the first six days. These findings suggest that while PRF may not significantly reduce AO incidence, it can contribute to improved patient comfort and recovery by decreasing early postoperative pain.

PMID:40517125 | DOI:10.1016/j.ijom.2025.06.007

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Identifying radiologically significant incidental breast lesions on chest CT: The added value of artificial intelligence

Curr Probl Diagn Radiol. 2025 Jun 3:S0363-0188(25)00114-8. doi: 10.1067/j.cpradiol.2025.06.001. Online ahead of print.

ABSTRACT

BACKGROUND: Breast lesions are a common but often missed incidental finding. We evaluated whether artificial intelligence (AI) algorithms can efficiently detect radiologically significant incidental breast lesions (RSIBLs) missed by original interpreting radiologists (OIRs) on chest CT examinations.

METHODS: This retrospective multi-institutional study analyzed chest CT examinations performed in June 2017 by a national teleradiology practice. Visual classifier (VC) and natural language processing (NLP) algorithms flagged potential RSIBLs, which were reviewed independently by two primary readers; disagreements were adjudicated by a third reader. Sizes and margins of confirmed RSIBLs were evaluated similarly. Differences in size and margin obscuration between RSIBLs missed versus identified by OIRs were statistically assessed (alpha, 0.05). A workflow efficiency analysis was performed.

RESULTS: 3279 of 3541 examinations (92.6 %) were marked negative by both algorithms (i.e., VC-/NLP-) and not reviewed. The two primary readers assessed 262 examinations for RSIBLs, with substantial agreement (kappa, 0.77). After adjudication, 76 RSIBLs were confirmed (73 females, 3 males). Compared with the OIRs, the VC algorithm identified more RSIBLs (90.8 % [69/76] vs 39.5 % [30/76]) though with more false positives (67.9 % [178/262] vs. 3.4 % [9/262]). Among the OIRs, missed RSIBLs had smaller diameters than identified RSIBLs (1.4 cm vs. 3.0 cm; P < 0.001). Our reader workflow reduced the number of images viewed by 97.3 % relative to a hypothetical full double-read approach.

CONCLUSION: An AI-based approach enhanced RSIBL detection rates. Although the AI-based approach also increased the number of false positives, our targeted review process allowed for efficient detection of missed RSIBLs.

PMID:40517117 | DOI:10.1067/j.cpradiol.2025.06.001

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Role of vitamin D supplementation and vitamin D receptor in drug-resistant epilepsy: A double-blind placebo-controlled trial conducted in India

Epilepsia. 2025 Jun 14. doi: 10.1111/epi.18492. Online ahead of print.

ABSTRACT

OBJECTIVE: Vitamin D has demonstrated potential anticonvulsant effects in experimental and pilot clinical studies; the results of these remain inconclusive. This study aims to investigate the efficacy and safety of adjunctive Vitamin D supplementation in reducing seizure frequency, modulating vitamin D receptor (VDR) activity, and altering the putative biomarkers of epileptogenesis in persons with drug-resistant epilepsy (DRE).

METHODS: This double-blind, placebo-controlled, parallel-group, adjunctive trial recruited patients from a tertiary care hospital in India. Adult persons with DRE and serum Vitamin D levels <30 ng/mL, experiencing ≥2 seizures/month, were randomized (1:1 ratio) to receive either Vitamin D (60,000 IU/week for 3 months, followed by 60 000 IU/month for the next 3 months) or a matching placebo, in addition to their ongoing antiseizure medications. The primary outcome was the percentage change in monthly seizure frequency from baseline to 6 months. Secondary outcomes included 50% responder, serum Vitamin D (25-hydroxycholecalciferol) levels, VDR protein/mRNA expression, putative biomarkers of epileptogenesis (including high-mobility group box protein 1 [HMGB1] and neurotrophin-3 [NT-3]), quality of life, and safety assessment.

RESULTS: Of 200 participants, 99 were in the Vitamin D group and 101 were in the placebo group. No statistically significant difference was observed between the Vitamin D and placebo groups in the primary outcome of percentage change in monthly seizure frequency from baseline after 6 months of intervention (median 33.3, interquartile range [IQR] 0-57.4 vs 16.7, 0-66.7; median estimate 5.5, 95% confidence interval [CI]: -6.7 to 19.2); p = 0.36]. The 50% responder rate was similar between groups (37% vs 35%; odds ratio 1.1, 95% CI: 0.6-1.9; p = 0.68). However, Vitamin D supplementation significantly increased VDR mRNA and protein expression (p < 0.001) and decreased HMGB1 (p = 0.001) and NT-3 (p = 0.002) levels compared to placebo. The recommended serum Vitamin D level (≥30 ng/mL) was achieved in only 36% of subjects in the Vitamin D group. Safety outcomes were comparable between groups.

SIGNIFICANCE: Six months of Vitamin D supplementation at the selected dose did not significantly reduce seizures compared to placebo, potentially due to few persons with DRE achieving recommended serum Vitamin D level (≥30 ng/mL). Significant upregulation of VDR expression and reduction in putative biomarkers of epileptogenesis following Vitamin D supplementation were seen in Vitamin D group despite no corresponding decrease in seizure frequency. This suggests that Vitamin D may have underlying therapeutic effects that warrant further investigation and clinical correlation.

PMID:40516032 | DOI:10.1111/epi.18492

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How am I Going to Live? How am I Going to Pay Rent?”: A Mixed Methods Investigation of Employment, Stigma, and Financial Hardship Among LGBTQ+ Cancer Caregivers

Cancer Control. 2025 Jan-Dec;32:10732748251351105. doi: 10.1177/10732748251351105. Epub 2025 Jun 14.

ABSTRACT

IntroductionEmployment changes among cancer caregivers are common and can result in financial hardship. Lesbian, gay, bisexual, transgender, queer, and other identities outside of cisgender heterosexual (LGBTQ+) individuals are more likely to live in poverty and experience workplace discrimination than non-LGBTQ+ individuals. This study aimed to assess the impact of caregiving-related employment changes and anti-LGBTQ+ stigma on financial hardship and describe lived experiences with financial hardship and related employment changes among LGBTQ+ cancer caregivers.MethodsAn explanatory mixed-methods study was conducted and included a national survey and individual interviews with survey participants. Multivariable logistic regression models were used to test the association of employment changes with financial hardship. An inductive qualitative analysis guided by two of the three domains of financial hardship (ie, material and behavioral) was conducted. Quantitative and qualitative data were integrated throughout the study.ResultsA total of N = 332 LGBTQ+ cancer caregivers participated in the survey, and N = 14 participated in an interview. The average modified COmprehensive Score for financial Toxicity and Caregiver Reaction Assessment financial sub-scale were 25.6 (SD: 9.9, Range: 1-44) and 2.99 (SD: 1.0, Range: 1-5). Employment changes (OR: 3.32, 95% CI: 1.73-6.36) and anti-LGBTQ+ stigma (OR: 2.21, 95% CI: 1.47-3.32) were associated with high financial hardship. Three overarching themes from the qualitative analysis included: 1) Financial Hardship: Increased Costs, Strained Finances, and Lost Wages; 2) Caregiving as an LGBTQ+ Person: Stigma, Outness, and Expectations; and 3) Financial Unmet needs and Recommendations.ConclusionLGBTQ+ cancer caregivers experience substantial financial hardship that is associated with employment changes and anti-LGBTQ+ stigma. LGBTQ + cancer caregivers reported varying levels of outness and acceptance that directly influenced their access to financial support. Cancer-related financial hardship interventions tailored to the needs of LGBTQ+ individuals are needed.

PMID:40516028 | DOI:10.1177/10732748251351105

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Cumulative live birth rates among over 13,000 poor ovarian responders from 2015 to 2023: a retrospective cohort study assessing the efficacy of natural cycle and controlled ovarian stimulation

J Assist Reprod Genet. 2025 Jun 14. doi: 10.1007/s10815-025-03544-z. Online ahead of print.

ABSTRACT

BACKGROUND: Natural cycle in vitro fertilization (NC-IVF) represents a convenient and safe assisted reproductive technology, making it particularly advantageous for patients with poor ovarian response (POR). This research evaluates the effectiveness of NC-IVF for women with POR, aiming to inform personalized treatment decisions.

METHOD: This retrospective cohort study encompassed 13,013 cycles involving women diagnosed with poor ovarian response according to the Bologna criteria. These patients underwent either natural cycles or controlled ovarian stimulation cycles. The primary outcome measure was the cumulative live birth rates, and the secondary outcomes included laboratory and clinical outcomes.

RESULTS: A total of 1073 natural cycles and 11,940 COS cycles were analyzed, with 5956 undergoing low-dose gonadotropin treatment and 5984 receiving high-dose gonadotropin. The basic characteristics were comparable among the three groups. In both fresh and frozen embryo transfer cycles, clinical pregnancy rates, implantation rates, and live birth rates were comparable across all three groups. Furthermore, no statistically significant differences were observed in cumulative live birth rates or time to first live birth between the groups examined. Expenditures in the natural cycle group were substantially lower than those in both COS cohorts. Importantly, further analysis indicated that there were no significant differences among the three groups concerning either pregnancy complications or neonatal outcomes.

CONCLUSION: Our findings indicate that for women demonstrating a poor ovarian response, NC treatment yields comparable pregnancy and live birth rates when compared to controlled ovarian stimulation methods. The natural cycle represents a safe, effective, and economically viable treatment option for this patient population.

PMID:40516010 | DOI:10.1007/s10815-025-03544-z

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The role of activated partial thromboplastin time-clot waveform analysis in distinguishing positive samples of lupus anticoagulant from hemophilia A

J Thromb Thrombolysis. 2025 Jun 14. doi: 10.1007/s11239-025-03128-9. Online ahead of print.

ABSTRACT

INTRODUCTION: Clot waveform analysis (CWA) is a technique that continuously monitors changes in light transmittance or absorbance during fibrin clot formation in plasma, enhancing routine clotting test assessment. Patients with Lupus Anticoagulant (LA) and Hemophilia A (HA) both exhibit isolated prolongation of activated partial thromboplastin time (aPTT); however, their management differs significantly. CWA can aid in distinguishing between these conditions, particularly in cases where standard coagulation tests are inconclusive and specialized assays are unavailable.

METHODS: This prospective case-control study included patients with demonstrable LA (n = 69), healthy controls (n = 75) and diseased controls [HA with (n = 16) and without inhibitor (n = 36).

RESULTS: The quantitative data of aPTT-CWA including velocity peak time, acceleration peak time and height of acceleration [-] were significantly lower in LA-positive samples with prolonged aPTT in comparison with HA without inhibitors. The qualitative data comprising Shoulder in 1st derivative, Biphasic wave in 2nd derivative [-] and Serrated wave pattern in 2nd derivative were significantly common in HA samples without inhibitors. In comparison to healthy controls, LA-positive patients with normal aPTT had significantly lower velocity peak time and height of velocity along with higher width of velocity. In acceleration peak time and width of acceleration [-] peak were significantly higher along with lower height of acceleration [+] and height of acceleration [-]. AUROCs of height of acceleration [-], width of acceleration [-] and width of velocity were statistically and biologically significant. The shoulder in 2nd derivative was significantly common in LA-positive samples.

CONCLUSION: The aPTT-CWA has limited utility for differentiating LA positive from HA samples with and without inhibitors. However, aPTT-CWA may help in selecting patients with normal aPTT who merit further confirmatory testing for LA with a compatible history.

PMID:40515980 | DOI:10.1007/s11239-025-03128-9

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Utility of multiparametric MRI including T1/T2 mapping and IVIM/diffusion imaging for the evaluation of non-obstructive azoospermia

MAGMA. 2025 Jun 14. doi: 10.1007/s10334-025-01267-x. Online ahead of print.

ABSTRACT

INTRODUCTION AND OBJECTIVES: The management of non-obstructive azoospermia (NOA) remains challenging because no predictive test for the presence of localized spermatogenesis exists. Previous work considered MRI techniques, such as spectroscopy (MRS) and diffusion weighted imaging (DWI), in this role. We report here data from a prospective study evaluating additional advanced MRI sequences for predicting spermatogenesis in patients with NOA.

METHODS: 9 fertile volunteers and 18 men with NOA were prospectively recruited. Each participant underwent a novel multi-parametric MRI consisting of T1 and T2 mapping as well as intravoxel incoherent motion (IVIM) and diffusion weighted imaging (DWI). A single radiologist drew representative regions of interest on the best quality images for each sequence and recorded the mean values. Sperm extraction procedure results were recorded. Two-end points were evaluated: NOA versus fertile controls and the presence of viable sperm within the NOA cohort. The data were analyzed per patient. Nonparametric and logistic regression statistical analysis were used.

RESULTS: 9 fertile men (median 43 years old, 2 children) and 18 men with NOA (median 37 years old, 0 children) were studied. 11 of the 18 men with NOA had testicle sampling. 4 men with NOA had viable sperm. Follicle-stimulating hormone and testosterone levels were not significantly different among NOAmen with and without sperm (p-value = 0.58 and 0.25). Nonparametric analysis with the Wilcoxon rank sum test showed T2 relaxation time was lower among NOA patients (median 101 vs 135 ms, p-value = 0.002), apparent diffusion coefficient (ADC) was higher among NOA patients (median 127.9 vs. 106.7 × 10-5 mm2/sec, p-value = 0.005). T1 relaxation time, alpha (Water diffusion heterogeneity index), D (IVIM-based apparent diffusion coefficient), DDC (Distributed diffusion coefficient) and D* (pseudodiffusion) were also significantly different. On logistic regression analysis, both T2 and ADC were associated with NOA; The odds of NOA decreased by 6% for each msec increase in T2 (p-value = 0.02) while the odds of NOA increased by 11% for each 10⁻5 mm2/sec increase in ADC, (p-value = 0.02). T2 yielded a larger area under the receiver operating characteristic curve than ADC (0.87 versus 0.84). Alpha, D, DDC and D* also predicted NOA. Amongst men with NOA who underwent testicle sampling, T2 was lower in testicles of patients with no sperm retrieved (median 73 vs 134. msec, p-value = 0.02). The remaining variables were not significantly different between the cohorts.

CONCLUSIONS: In spite of the small sample size, particularly for men with NOA who underwent sperm extraction, these results suggest that several novel MRI parameters, such as T2 relaxation time and certain IVIM/DWI parameters, are able to distinguish between fertile men and men with NOA as well as potentially predict successful sperm extraction in men with NOA. Additional larger prospective studies of men with NOA undergoing sperm extraction are warranted.

PMID:40515974 | DOI:10.1007/s10334-025-01267-x

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Analysis of the characteristics of the fish community structure and aquaculture capacity in the medium-sized reservoir-take the Qiaoying Reservoir as the case, China

Environ Monit Assess. 2025 Jun 14;197(7):751. doi: 10.1007/s10661-025-14205-0.

ABSTRACT

This study investigates the ecological dynamics of Qiaoying Reservoir, a medium-sized multi-purpose water body in Zhejiang Province, China, through seasonal (spring and autumn 2022) analyses of aquatic communities, water quality, and Ecopath modeling. Fish community structure showed seasonal shifts, with Cypriniformes dominating (68.75% in spring, 88.89% in autumn), while zooplankton composition transitioned from Cladocera-dominated (38.46%) to Copepoda-dominated (35.71%) between seasons. Phytoplankton biomass and density exhibited consistent spatial patterns (higher in southeastern zones). Water quality met Class I standards, with stable physicochemical parameters. Ecopath modeling revealed simplified trophic interactions (Connectance Index, 0.333; Omnivory Index, 0.136), with 76% of energy flow concentrated at trophic level I (primary producers). The low inter-trophic transfer efficiency (total 2.25%) highlighted imbalances, notably insufficient grazer pressure on phytoplankton. Recommendations include diversifying fish stocking (Hypophthalmichthys nobilis, Cyprinus carpio, Hypophthalmichthys molitrix, Carassius auratus, and Megalobrama terminalis) to enhance trophic regulation, adjusting harvest strategies. This integrated approach supports sustainable fisheries management by aligning ecological capacity with socioeconomic needs, emphasizing the role of filter-feeding species in maintaining water quality and ecosystem stability.

PMID:40515961 | DOI:10.1007/s10661-025-14205-0