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Nevin Manimala Statistics

Pathogenesis of a novel porcine parainfluenza virus type 1 isolate in conventional and colostrum deprived/caesarean derived pigs

Virology. 2021 Sep 3;563:88-97. doi: 10.1016/j.virol.2021.08.015. Online ahead of print.

ABSTRACT

Two experimental challenge studies were conducted to evaluate the pathogenesis of a porcine parainfluenza virus type 1 (PPIV-1) isolate. Four-week-old conventional (CON) pigs were challenged in Study 1 and six-week-old caesarean derived/colostrum deprived (CDCD) pigs were challenged in Study 2. Results indicate that PPIV-1 shedding and replication occur in the upper and lower respiratory tracts of CON and CDCD pigs as detected by RT-qPCR and immunohistochemistry. Mild macroscopic lung lesions were observed in CON pigs but not in CDCD pigs. Microscopic lung lesions were mild and consisted of peribronchiolar lymphocytic cuffing and epithelial proliferation in CON and CDCD pigs. Serum neutralizing antibodies were detected in the CON and CDCD pigs by 14 and 7 days post inoculation, respectively. This study provides evidence that in spite of PPIV-1 infection and replication in challenged swine, significant clinical respiratory disease was not observed.

PMID:34500147 | DOI:10.1016/j.virol.2021.08.015

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Nevin Manimala Statistics

Changes in placental elastography in the third trimester – Analysis using a linear mixed effect model

Placenta. 2021 Sep 4;114:83-89. doi: 10.1016/j.placenta.2021.09.001. Online ahead of print.

ABSTRACT

INTRODUCTION: Research into the role of ultrasound elastography to assess compromised placental tissue is ongoing. There is particular interest in evaluating its potential in the investigation of changes associated with uteroplacental dysfunction. To date, there is limited data on how different maternal and fetal considerations, such as advancing gestational age, amniotic fluid Index (AFI) and maternal body mass index (BMI) may influence shear wave velocity (SWV) measurements. This study aimed to evaluate longitudinal changes in SWV throughout gestation and model these changes with other developing fetal and maternal physiological and biological characteristics.

METHODS: The study utilised 238 singleton pregnancies and collected longitudinal data at repeated intervals in the 3rd trimester representing 629 individual data points. Linear mixed model regression analysis was used to identify significant predictors for SWV.

RESULTS: From a total of ten variables selected for modelling, only gestational age, AFI, BMI, and sample depth were found to be significant predictors of placental SWV, and gestational age and AFI were found to have only a minimal impact on SWV.

DISCUSSION: Sophisticated statistical modelling demonstrates that many of the expected maternal and fetal changes in the 3rd trimester have no or minimal impact on placental SWV. Understanding which factors influence placental SWV is essential to ascertain the technique’s utility in managing pregnancies complicated by placental dysfunction in the future.

PMID:34500214 | DOI:10.1016/j.placenta.2021.09.001

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Nevin Manimala Statistics

Projections of meteorological drought based on CMIP6 multi-model ensemble: A case study of Henan Province, China

J Contam Hydrol. 2021 Sep 3;243:103887. doi: 10.1016/j.jconhyd.2021.103887. Online ahead of print.

ABSTRACT

Future changes in drought events are critical for risk assessment and associated policymaking. In this study, the future changes in meteorological droughts in Henan Province, China are explored. Random forests downscaling model is first constructed based on ERA5 reanalysis data and meteorological observations. The model is validated using evaluation indices such as R2 and RMSE, and is shown to be able to capture the relationship between large-scale predictors and monthly precipitation. The validated random forests downscaling model is driven by multiple global climate models (GCMs) from the Phase 6 of the Coupled Model Intercomparison Project (CMIP6) under three emission scenarios for projecting three future drought characteristics (duration, frequency, and intensity). Results show that drought frequency decreases in most areas of Henan while drought duration and intensity increase in various degrees. Some differences are also observed among different emission scenarios, especially under SSP2-4.5, where the magnitudes of changes in drought duration and intensity are lower relative to other scenarios. The decrease in drought frequency in most areas is found to be caused by increases in monthly mean precipitation in this study. Changes in drought duration and intensity are related to a combination of increases in precipitation mean and variability.

PMID:34500145 | DOI:10.1016/j.jconhyd.2021.103887

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Nevin Manimala Statistics

Retrospective evaluation of fluid production at the time of thoracostomy tube removal following elective and emergency surgery in dogs (2010-2017): 185 cases

J Vet Emerg Crit Care (San Antonio). 2021 Sep 9. doi: 10.1111/vec.13138. Online ahead of print.

ABSTRACT

OBJECTIVE: To report the rate of fluid production at the time of removal of thoracostomy tubes placed intraoperatively and to determine the association of this rate with specific patient factors, surgical factors, or clinical diagnosis. The secondary objective was to determine whether identification of pleural effusion within 2 weeks of thoracostomy tube removal was associated with the same variables.

DESIGN: Retrospective study.

SETTING: University teaching hospital.

ANIMALS: One hundred eighty-five client-owned dogs with thoracostomy tubes placed intraoperatively between January 2010 and March 2017.

INTERVENTIONS: None.

MEASUREMENTS AND MAIN RESULTS: Thoracostomy tubes were removed at a median fluid production of 0.09 mL/kg/h (range, 0-7.0 m L/kg/h). Median fluid production at the time of thoracostomy tube removal was significantly higher in dogs with preoperative pleural effusion compared to dogs without preoperative pleural effusion (0.21 vs 0.05 mL/kg/h; P = 0.0001) and in dogs that had a median sternotomy compared to dogs that had a lateral thoracotomy (0.14 vs 0.09 mL/kg/h; P = 0.04). Of the 169 dogs available for follow-up, 12 (7.1%) had pleural effusion within 2 weeks of removal of the thoracostomy tube. Detection of pleural effusion during the follow-up period was significantly associated with the presence of preoperative pleural effusion (P = 0.0019) and the diagnosis (P = 0.01). A greater proportion of dogs with a lung lobe torsion (4/9, 44.4%) and idiopathic chylothorax (2/7, 28.5%) had pleural effusion within 2 weeks compared to other diagnoses. Reintervention was performed in 4.7% of dogs.

CONCLUSIONS: Thoracostomy tubes were removed at pleural fluid production rates that frequently exceeded current veterinary guidelines. However, the fluid production rate at the time of thoracostomy tube removal was not associated with the detection of pleural effusion within 2 weeks of thoracostomy tube removal, and the overall need for reintervention following thoracostomy tube removal was low (4.7%).

PMID:34499801 | DOI:10.1111/vec.13138

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Nevin Manimala Statistics

The current situation and potential effects of climate change on the microbial load of marine bivalves of the Greek coastlines: An integrative review

Environ Microbiol. 2021 Sep 9. doi: 10.1111/1462-2920.15765. Online ahead of print.

ABSTRACT

Global warming affects the aquatic ecosystems, accelerating pathogenic microorganisms’ and toxic microalgae’s growth and spread in marine habitats, and in bivalve molluscs. New parasite invasions are directly linked to oceanic warming. Consumption of pathogen-infected molluscs impacts human health at different rates, depending, inter alia, on the bacteria taxa. It is therefore necessary to monitor microbiological and chemical contamination of food. Many global cases of poisoning from bivalve consumption can be traced back to Mediterranean regions. This paper’s aim is to examine the marine bivalve’s infestation rate within the scope of climate change, as well as to evaluate the risk posed by climate change to bivalve welfare and public health. Biological and climatic data literature review was performed from international scientific sources, Greek authorities and State organizations. Focusing on Greek aquaculture and bivalve fisheries, high risk index pathogenic parasites and microalgae were observed during summer months, particularly in Thermaikos Gulf. Considering the climate models that predict further temperature increases, it seems that marine organisms will be subjected in the long-term to higher temperatures. Due to the positive linkage between temperature and microbial load, the marine areas most affected by this phenomenon are characterized as “high risk” for consumer health. This article is protected by copyright. All rights reserved.

PMID:34499795 | DOI:10.1111/1462-2920.15765

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Nevin Manimala Statistics

Development of a veterinary trauma score (VetCOT) in canine trauma patients with performance evaluation and comparison to the animal trauma triage score: A VetCOT registry study

J Vet Emerg Crit Care (San Antonio). 2021 Sep 9. doi: 10.1111/vec.13135. Online ahead of print.

ABSTRACT

OBJECTIVE: To develop a population-derived, parsimonious, and objective risk stratification model for dogs following trauma and compare its predictive performance to the animal trauma triage (ATT) score.

DESIGN: Observational cohort study using data from the American College of Veterinary Emergency and Critical Care Veterinary Committee on Trauma (VetCOT) trauma registry acquired between September 2013 and October 2017.

SETTING: Nine Level I and Level II veterinary trauma centers.

ANIMALS: Nine hundred eighty-four dogs assessed within 24 h of traumatic injury.

INTERVENTIONS: None.

MEASUREMENTS AND MAIN RESULTS: Patient mortality was 10.8%. The VetCOT model was constructed based on 4 variables: plasma lactate and ionized calcium obtained within 6 h of admission, and presence or absence of clinical signs consistent with either head or spinal trauma. The VetCOT score had good discriminatory performance (AUROC = 0.87, 95% CI = 0.83-0.91) comparable to that of the 6 variable ATT score for the same population (area under the receiver operator characteristic [AUROC] = 0.87; 95% CI, 0.84-0.90). No statistical difference in discriminatory performance between the 2 scores was identified (P = 0.98). The VetCOT score showed good calibration on this population (Hosmer-Lemeshow test P = 0.93), whereas the ATT score failed to calibrate (P = 0.02) due to overprediction of mortality at low scores. Sensitivity and specificity for outcome of the VetCOT score at a risk probability cutoff of 0.5 for this population were 28.97% and 97.95%, respectively.

CONCLUSIONS: The VetCOT score is a more parsimonious model with comparable discriminatory performance and superior calibration to the ATT score for risk stratification in dogs following trauma. Further prospective validation studies are required to confirm the discriminatory performance of the VetCOT score.

PMID:34499798 | DOI:10.1111/vec.13135

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Nevin Manimala Statistics

GdDO3NI Enhanced Magnetic Resonance Imaging Allows Imaging of Hypoxia After Brain Injury

J Magn Reson Imaging. 2021 Sep 9. doi: 10.1002/jmri.27912. Online ahead of print.

ABSTRACT

BACKGROUND: Brain tissue hypoxia is a common consequence of traumatic brain injury (TBI) due to the rupture of blood vessels during impact and it correlates with poor outcome. The current magnetic resonance imaging (MRI) techniques are unable to provide a direct map of tissue hypoxia.

PURPOSE: To investigate whether GdDO3NI, a nitroimidazole-based T1 MRI contrast agent allows imaging hypoxia in the injured brain after experimental TBI.

STUDY TYPE: Prospective.

ANIMAL MODEL: TBI-induced mice (controlled cortical impact model) were intravenously injected with either conventional T1 agent (gadoteridol) or GdDO3NI at 0.3 mmol/kg dose (n = 5 for each cohort) along with pimonidazole (60 mg/kg) at 1 hour postinjury and imaged for 3 hours following which they were euthanized.

FIELD STRENGTH/SEQUENCE: 7 T/T2 -weighted spin echo and T1 -weighted gradient echo.

ASSESSMENT: Injured animals were imaged with T2 -weighted spin-echo sequence to estimate the extent of the injury. The mice were then imaged precontrast and postcontrast using a T1 -weighted gradient-echo sequence for 3 hours postcontrast. Regions of interests were drawn on the brain injury region, the contralateral brain as well as on the cheek muscle region for comparison of contrast kinetics. Brains were harvested immediately post-imaging for immunohistochemical analysis.

STATISTICAL TESTS: One-way analysis of variance and two-sample t-tests were performed with a P < 0.05 was considered statistically significant.

RESULTS: GdDO3NI retention in the injury region at 2.5-3 hours post-injection was significantly higher compared to gadoteridol (mean retention fraction 63.95% ± 27.43% vs. 20.68% ± 7.43% for gadoteridol at 3 hours) while it rapidly cleared out of the muscle region. Pimonidazole staining confirmed the presence of hypoxia in both gadoteridol and GdDO3NI cohorts, and the later cohort showed good agreement with MRI contrast enhancement.

DATA CONCLUSION: GdDO3NI was successfully shown to visualize hypoxia in the brain post-TBI using T1 -weighted MRI at 2.5-3 hours postcontrast.

EVIDENCE LEVEL: 1 TECHNICAL EFFICACY: Stage 1.

PMID:34499791 | DOI:10.1002/jmri.27912

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Nevin Manimala Statistics

The relationship between the digit ratio (2D:4D) and vertical jump performance in young athletes

Am J Hum Biol. 2021 Sep 9:e23679. doi: 10.1002/ajhb.23679. Online ahead of print.

ABSTRACT

BACKGROUND: Digit ratio (2D:4D), a putative marker of prenatal testosterone, is a negative correlate of sports, athletic, and fitness performance.

OBJECTIVES: To describe the relationship between 2D:4D and vertical jump performance in athletes.

METHODS: Sixty-one Division I American Football players from a Midwestern U.S. university had their 2D:4D measured digitally and their vertical jump performance measured using jump mechanography. The primary outcome was jump height, with secondary outcomes depicting jump execution also recorded. Linear relationships between 2D:4D and vertical jump performance were quantified using partial correlations adjusted for age, height, mass, and ethnicity.

RESULTS: 2D:4D was a statistically significant weak negative correlate of jump height (partial r [95% confidence interval]: -0.26 [-0.48, -0.01]), indicating that athletes with lower 2D:4Ds (i.e., relatively longer 4th digits) jumped higher. Relationships with jump execution variables were negligible to weak and negative, but not statistically significant.

CONCLUSIONS: The significant relationship between 2D:4D and jump height probably reflects both the long-term organizational and short-term activational benefits of testosterone. Therefore, 2D:4D may be a useful indicator of explosive strength among young athletes.

PMID:34499783 | DOI:10.1002/ajhb.23679

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Nevin Manimala Statistics

Perfusion Analysis of Kidney Injury in Rats With Cirrhosis Induced by Common Bile Duct Ligation Using Arterial Spin Labeling MRI

J Magn Reson Imaging. 2021 Sep 9. doi: 10.1002/jmri.27917. Online ahead of print.

ABSTRACT

BACKGROUND: Arterial spin labeling (ASL) has been proven to be effective in ischemia-induced acute kidney injury (AKI); however, validation of ASL magnetic resonance imaging (MRI) is limited in AKI in the presence of cirrhosis.

PURPOSE: To investigate the feasibility of ASL in revealing renal blood flow (RBF) changes in kidney injury in the presence of cirrhosis and to assess its value in the early diagnosis of disease.

STUDY TYPE: Longitudinal.

ANIMAL MODEL: Rats were randomized into baseline group (N = 3), sham surgery group (N = 18), and common bile duct ligation (BDL) group (N = 48). All groups were divided into six subgroups based on different sacrificed time points.

FIELD STRENGTH/SEQUENCE: 3 T scanner, prototypic pulsed ASL sequence using flow-sensitive alternating inversion recovery preparation, half-Fourier acquisition single-shot turbo spin echo sequence.

ASSESSMENT: RBF measurement was performed by ASL. Hematoxylin-eosin (HE) score, Hypoxia-inducible factor-1alpha (HIF-1α) score, peritubular capillar (PTC) density, alanine aminotransferase, aspartate aminotransferase, serum total bilirubin, total bile acids, serum creatinine (Scr), and blood urea nitrogen (BUN) were harvested.

STATISTICAL TESTS: Analysis of variance, Pearson’s correlation coefficient, and receiver operating characteristic curves were performed. P < 0.05 was considered statistically significant.

RESULTS: RBF, HE score, HIF-1α score, and PTC density after BDL were significantly different from baseline. RBF was highly correlated with HE score, HIF-1α score, and PTC density (r = -0.7598, r = -0.7434, r = 0.6406, respectively). RBF and Scr began to differ significantly from baseline at day 3 and 7 after intervention, respectively. The areas under the curves of RBF, Scr, and BUN for distinguishing non-AKI from AKI in cirrhosis were 1.00, 0.888, and 0.911, while those for distinguishing mild from severe kidney injury were 0.961, 0.830, and 0.857, respectively.

DATA CONCLUSION: ASL allows the longitudinal assessment of the degree of AKI induced by cholestatic cirrhosis in rats and can serve as a noninvasive marker for the early and accurate diagnosis of AKI.

LEVEL OF EVIDENCE: 2 TECHNICAL EFFICACY STAGE: 2.

PMID:34499757 | DOI:10.1002/jmri.27917

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Nevin Manimala Statistics

Simultaneous confidence intervals for contrasts of quantiles

Biom J. 2021 Sep 9. doi: 10.1002/bimj.202000077. Online ahead of print.

ABSTRACT

Skewed distributions and inferences concerning quantiles are common in the health and social science researches. And most standard simultaneous inference procedures require the normality assumption. For example, few methods exist for comparing the medians of independent samples or quantiles of several distributions in general. To our knowledge, there is no easy-to-use method for constructing simultaneous confidence intervals for multiple contrasts of quantiles in a one-way layout. In this paper, we develop an asymptotic method for constructing such intervals both for differences and ratios of quantiles and extend the idea to that of right-censored time-to-event data in survival analysis. Small-sample performance of the proposed method and a bootstrap method were assessed in terms of coverage probabilities and average widths of the simultaneous confidence intervals. Good coverage probabilities were observed for most of the distributions considered in our simulations. The proposed methods have been implemented in an R package and are used to analyze two motivating datasets.

PMID:34499768 | DOI:10.1002/bimj.202000077