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Nevin Manimala Statistics

An evaluation of the knowledge and attitudes that Health Care Services department students have about epilepsy

Epilepsy Behav. 2022 Jul 15;134:108840. doi: 10.1016/j.yebeh.2022.108840. Online ahead of print.

ABSTRACT

AIM: This study was conducted to examine the knowledge and attitudes that students in the field of healthcare services have about epilepsy.

METHOD: This cross-sectional and descriptive study was conducted with 312 students of the Department of Health Care Services (home patient and elderly care) in Turkey. The data were collected using a sociodemographic information form, the Epilepsy Knowledge Level Scale, and the Attitudes Towards Epilepsy Scale. Descriptive statistics, the Shapiro-Wilk test, the Mann-Whitney U test, the Kruskal-Wallis H test and the Spearman correlation test were used to analyze the data. Significance was considered as p < 0.05.

RESULTS: Students in the field of healthcare services constituted the sample of the study, and more than half of the students (68.3%) were female. The mean scores obtained from the Epilepsy Knowledge Scale and the Epilepsy Attitude Scale were 8.38 ± 4.29 and 60.02 ± 7.28 respectively. A positive and significant relationship was found between the students’ knowledge and attitude scores about epilepsy (p < 0.01). It was found that students’ attitudes toward epilepsy positively increased as their knowledge increased. It was observed that female students who received education about epilepsy, witnessed seizures, and had relatives with epilepsy had more positive attitudes toward epilepsy.

CONCLUSION: In this study, it was found that the student participants had a moderate level of knowledge about epilepsy and exhibited a positive attitude toward epilepsy. It was determined that the students’ attitudes toward epilepsy positively increased as their level of knowledge about epilepsy increased.

PMID:35849866 | DOI:10.1016/j.yebeh.2022.108840

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Antioxidant and analgesic potential of butorphanol in dogs undergoing ovariohysterectomy

Theriogenology. 2022 Jul 11;190:1-7. doi: 10.1016/j.theriogenology.2022.07.002. Online ahead of print.

ABSTRACT

The aim of this study was to evaluate the postoperative analgesic and antioxidant effects of butorphanol given in the preoperative or early postoperative period. Twenty-seven healthy female dogs undergoing ovariohysterectomy were randomly divided into three groups as before surgery group (BSG, n = 7) received butorphanol 30 min before preanesthetic administration, after surgery group (ASG, n = 10) received butorphanol during the last skin suture and the control group (CG, n = 10) received no butorphanol. Pain was assessed with short form of the Glasgow composite pain scale (CMPS-SF). Serum concentration of malondialdehyde (MDA), superoxide dismutase (SOD) and glutathione peroxidase activities (GPx) were quantified by spectrophotometric methods to assess oxidative stress status. The pain score increased rapidly at 1 h after surgery and then decreased gradually towards to 24 h in all groups. There was no statistical difference among the groups in terms of CMPS-SF scores (P > 0.05). Serum concentration of MDA was lower in ASG than in BSG and CG from 1 h to 24 h after surgery. Serum activity of GPx was higher in ASG than in BSG and CG from 2 h to 24 h (P < 0.05). Serum activity of SOD was higher in ASG than in BSG and CG from 1 h to 24 h after surgery (P < 0.05). Serum SOD activity at different time points in ASG did not differ compared to preoperative level though it decreased significantly from 1 h onwards both in CT and BSG. The results indicate that single butorphanol administration either before or after the operation might not provide sufficient analgesia, however, it seems that it has antioxidant potential and may protect tissues by reducing oxidative stress when administered early postoperative period following ovariohysterectomy.

PMID:35849850 | DOI:10.1016/j.theriogenology.2022.07.002

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Virtual Care Prior to and During COVID-19: A Cross-Sectional Survey of Rural and Urban Adults

JMIR Form Res. 2022 Jul 14. doi: 10.2196/37059. Online ahead of print.

ABSTRACT

BACKGROUND: To reduce person-to-person contact, the COVID-19 pandemic has driven a massive shift to virtual care. Defined as the use of technology (synchronous or asynchronous) to support communication between healthcare providers and patients, rural-urban differences in virtual are relatively unexplored.

OBJECTIVE: The two-fold purpose of the present study was to examine rural and urban virtual care access, use, and satisfaction during the pandemic and to identify any unmet needs.

METHODS: A cross-sectional online survey exploring virtual care among rural and urban adults in summer 2021 using a combination of fixed and open-ended response options. Quantitative data were analyzed using both descriptive and inferential statistics, and qualitative data were analyzed using inductive thematic content analysis.

RESULTS: Overall, 501 (373, 74.4% female; Age 19-86 years; 237, 47.3% rural-living) Western Canadians completed the survey. Virtual care use was high among both rural (171/237, 72.2%) and urban (188/264, 71.2%) participants, with over half reporting having only started to use virtual care since the pandemic. The self-reported need for mental health programs and services increased during the pandemic compared to prior for both rural and urban participants. Among virtual care users, interest in its continuation was high. Our analysis also shows that internet quality (all Ps<.05) and eHealth literacy (all Ps<.001) were positively associated with participants’ perceptions of virtual care usefulness, ease of use, and satisfaction with no rural/urban differences. Rural participants were less likely to have used video in communicating with doctors/healthcare providers, compared to urban participants (P<.001). When describing unmet needs, participants described: 1) lack of access to care; 2) limited health promotion and prevention options; and 3) lack of mental health service options.

CONCLUSIONS: The increased demand for and use of virtual care may reflect increased availability and a lack of alternatives due to limited in-person services during the COVID-19 pandemic, so a balance between virtual care and in-person care is important to consider post-pandemic. Further, ensuring availability of high-speed internet and education to support patients will be important for providing accessible and effective virtual care, especially for rural residents.

PMID:35849794 | DOI:10.2196/37059

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Nevin Manimala Statistics

DOCKSTRING: Easy Molecular Docking Yields Better Benchmarks for Ligand Design

J Chem Inf Model. 2022 Jul 18. doi: 10.1021/acs.jcim.1c01334. Online ahead of print.

ABSTRACT

The field of machine learning for drug discovery is witnessing an explosion of novel methods. These methods are often benchmarked on simple physicochemical properties such as solubility or general druglikeness, which can be readily computed. However, these properties are poor representatives of objective functions in drug design, mainly because they do not depend on the candidate compound’s interaction with the target. By contrast, molecular docking is a widely applied method in drug discovery to estimate binding affinities. However, docking studies require a significant amount of domain knowledge to set up correctly, which hampers adoption. Here, we present dockstring, a bundle for meaningful and robust comparison of ML models using docking scores. dockstring consists of three components: (1) an open-source Python package for straightforward computation of docking scores, (2) an extensive dataset of docking scores and poses of more than 260,000 molecules for 58 medically relevant targets, and (3) a set of pharmaceutically relevant benchmark tasks such as virtual screening or de novo design of selective kinase inhibitors. The Python package implements a robust ligand and target preparation protocol that allows nonexperts to obtain meaningful docking scores. Our dataset is the first to include docking poses, as well as the first of its size that is a full matrix, thus facilitating experiments in multiobjective optimization and transfer learning. Overall, our results indicate that docking scores are a more realistic evaluation objective than simple physicochemical properties, yielding benchmark tasks that are more challenging and more closely related to real problems in drug discovery.

PMID:35849793 | DOI:10.1021/acs.jcim.1c01334

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Single cell sequencing reveals trajectory of tumor-infiltrating lymphocyte states in pancreatic cancer

Cancer Discov. 2022 Jul 18:CD-21-1248. doi: 10.1158/2159-8290.CD-21-1248. Online ahead of print.

ABSTRACT

Pancreatic ductal adenocarcinoma (PDAC) has few effective treatments. Immunotherapy, an attractive alternative strategy, remains challenging with the lack of knowledge on the tumor-infiltrating lymphocyte (TIL) landscape in PDAC. To generate a reference of T-cell subpopulations, we profiled 80,000 T cells from 57 PDAC, 22 uninvolved/normal samples, and cultured TIL using single-cell transcriptomic and T-cell receptor analysis. These data revealed 20 cell states and heterogeneous distributions of TIL populations. The CD8+ TIL contained a putative transitional GZMK+ population based on TCR clonotype sharing, and cell-state trajectory analysis showed similarity to a GZMB+PRF1+ cytotoxic and a CXCL13+ dysfunctional population. Statistical analysis suggested that certain TIL states, such as dysfunctional and inhibitory populations, often occurred together. Finally, analysis of cultured TIL revealed that high-frequency clones from effector populations were preferentially expanded. These data provide a framework for understanding the PDAC TIL landscape for future TIL use in immunotherapy for PDAC.

PMID:35849783 | DOI:10.1158/2159-8290.CD-21-1248

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Bactericidal Efficacy of High Irradiance Ultraviolet A Photoactivation of Riboflavin Versus Standard Corneal Cross-Linking Protocol In Vitro

Cornea. 2022 Mar 31. doi: 10.1097/ICO.0000000000003031. Online ahead of print.

ABSTRACT

PURPOSE: The purpose of this study was to compare the efficacy of high ultraviolet A (UVA) irradiance photoactivation of riboflavin (vitamin B2) versus the standard corneal cross-linking protocol on bacterial viability.

METHODS: Methicillin-sensitive Staphylococcus aureus (MSSA) Newman strain and methicillin-resistant multidrug-resistant S. aureus (MDR-MRSA) USA300, CA409, CA127, GA656, and NY315 strains were exposed to a UVA energy dose of 5.4 to 6 J/cm2 by 2 high irradiance regimens: A) 30 mW/cm2 for 3 minutes and B) 10 mW/cm2 for 10 minutes with B2 0.1%. Control groups included B2/UVA alone, CA409 exposed to standard B2 0.1% + UVA (3 mW/cm2 for 30 minutes), and an untreated sample. Cell viability was assessed. Triplicate values were obtained. The Mann-Whitney test and Student t test were used for statistical analysis.

RESULTS: There was no difference comparing the median bacterial load (log CFU/mL) of the untreated samples versus regimen A: Newman P = 0.7, CA409 P = 0.3, USA300 P = 0.5, CA127 P = 0.6, GA656 P = 0.1, and NY315 P = 0.2 (P ≥ 0.1); and B: Newman P= 0.1, CA409 P = 0.3, USA300 P = 0.4, CA127 P = 0.6, GA656 P = 0.1, and NY315 P = 0.3 (P ≥ 0.1). Standard regimen killed 100% of CA409.

CONCLUSIONS: Photoactivation of B2 by high UVA irradiance does not seem to be effective for bacterial eradication in this study.

PMID:35849757 | DOI:10.1097/ICO.0000000000003031

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Nevin Manimala Statistics

Is it all in the family? Sexual identity differences in DSM-5 alcohol and other drug use disorders and associations with alcohol and other drug misuse history among parents, offspring, and other relatives

Subst Abus. 2022 Dec;43(1):1277-1285. doi: 10.1080/08897077.2022.2095080.

ABSTRACT

Background: The objectives of this study were to: (1) estimate the prevalence of family history of alcohol and other drug (AOD) misuse (positive family history [FH+]) in first- and second-degree relatives across sexual identity subgroups (i.e., lesbian, gay, bisexual, heterosexual); (2) compare AOD misuse among offspring of sexual minority and heterosexual parents; and (3) examine the relationships between FH+ and the Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition (DSM-5) alcohol use disorder (AUD) and other drug use disorder (ODUD) across sexual identity subgroups. Methods: Data were from the National Epidemiologic Survey on Alcohol and Related Conditions-III (n = 36,309 non-institutionalized U.S. adults aged ≥ 18 years). Data collection occurred in households using structured diagnostic face-to-face interviews during 2012-2013. Results: The presence of FH+ in first- and second-degree relatives was most prevalent among bisexual women relative to all other sexual orientation subgroups. Multivariable regression analyses indicated that the odds of AUD and ODUD were higher among FH+ adults relative to negative family history (FH-) adults. Lesbian and bisexual women had higher odds of AUD compared to heterosexual women, controlling for any FH+; this sexual identity difference was not found for men. There were no significant differences in ODUD between heterosexual FH- men and gay FH- men. We found differences in AOD misuse among offspring of bisexual parents, but not gay or lesbian parents compared to heterosexual parents. Conclusions: Health professionals should consider the higher likelihood of a family history of AOD misuse among sexual minorities, especially bisexual women, when treating these individuals. The lack of differences in AOD misuse among offspring of gay or lesbian parents relative to heterosexual parents warrants attention for legal, policy, and clinical decisions.

PMID:35849748 | DOI:10.1080/08897077.2022.2095080

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Machine Learning-Based Fragment Selection Improves the Performance of Qualitative PRM Assays

J Proteome Res. 2022 Jul 18. doi: 10.1021/acs.jproteome.2c00156. Online ahead of print.

ABSTRACT

Targeted mass spectrometry-based platforms have become a valuable tool for the sensitive and specific detection of protein biomarkers in clinical and research settings. Traditionally, developing a targeted assay for peptide quantification has involved manually preselecting several fragment ions and establishing a limit of detection (LOD) and a lower limit of quantitation (LLOQ) for confident detection of the target. Established thresholds such as LOD and LLOQ, however, inherently sacrifice sensitivity to afford specificity. Here, we demonstrate that machine learning can be applied to qualitative PRM assays to discriminate positive from negative samples more effectively than a traditional approach utilizing conventional methods. To demonstrate the utility of this method, we trained an ensemble machine learning model using 282 SARS-CoV-2 positive and 994 SARS-CoV-2 negative nasopharyngeal swabs (NP swab) analyzed using a targeted PRM method. This model was then validated using an independent set of 200 positive and 150 negative samples and achieved a sensitivity of 92% relative to results obtained by RT-PCR, which was superior to a traditional approach that resulted in 86.5% sensitivity when analyzing the same data. These results demonstrate that machine learning can be applied to qualitative PRM assays and results in superior performance relative to traditional methods.

PMID:35849720 | DOI:10.1021/acs.jproteome.2c00156

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Nevin Manimala Statistics

Malignant Self-Regard: Overview and Future Directions

Harv Rev Psychiatry. 2022 Jul-Aug 01;30(4):226-237. doi: 10.1097/HRP.0000000000000342.

ABSTRACT

Malignant self-regard (MSR) is a self-representation that encompasses the shared features of depressive personality disorder, masochistic/self-defeating personality disorder, depressive-masochistic personality, and vulnerable narcissism. In this review we begin by describing the construct’s historical precursors, which begin in early psychoanalytic/dynamic theory, and then trace its development across iterations of the Diagnostic and Statistical Manual of Mental Disorders. Special attention is paid to differentiating MSR from vulnerable narcissism. We then consider MSR’s place within transdiagnostic, transtheoretical, and dimensional models of personality pathology. We focus heavily on MSR’s impact on various personality systems (e.g., thought and affect systems) and also on overall personality functioning. The empirical research on MSR in relation to these systems is thoroughly reviewed and largely supports its psychometric properties and clinical significance. We suggest that MSR may map onto the distress subfactor in the hierarchical taxonomy of psychopathology (HiTOP) and that MSR seems to occupy the shared internalizing space across the neurotic and borderline level of personality organization in Kernberg’s model of personality disorders. We also identify four major directions for future research: the possible benefits of self-defeating tendencies that involve pathological narcissism and self-esteem; MSR’s relationship to overall health and well-being; depressive states and MSR severity; and how MSR fits within the Alternative Model for Personality Disorders and the personality disorder framework of the International Classification of Diseases.

PMID:35849740 | DOI:10.1097/HRP.0000000000000342

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Quantitative changes in mental health measures with 3MDR treatment for Canadian military members and veterans

Brain Behav. 2022 Jul 18:e2694. doi: 10.1002/brb3.2694. Online ahead of print.

ABSTRACT

OBJECTIVE: Military members and veterans are at elevated risk of treatment-resistant posttraumatic stress disorder (TR-PTSD) due to higher rates of exposure to potentially traumatic events during the course of duty. Knowledge of TR-PTSD is limited, and specific protocols or evidence-based TR-PTSD therapies are lacking. Multimodal motion-assisted memory desensitization and reconsolidation (3MDR) therapy is an emerging intervention for combat-related TR-PTSD. The purpose of this study was to preliminarily assess the effectiveness of 3MDR in addressing TR-PTSD in Canadian military members and veterans.

METHODS: This study is a longitudinal mixed-methods clinical trial. English-speaking military members and veterans aged 18-60 with TR-PTSD were recruited to participate. The intervention consisted of six sessions of 3MDR therapy. Quantitative data were collected pretreatment, posttreatment, and longitudinally at 1, 3, and 6 months after completion of 3MDR.

RESULTS: Results from the first 11 participants to complete the 3MDR protocol exhibited statistically significant improvement (surviving multiple comparison correction) in clinically administered and self-reported scores for PTSD (CAPS-5 and PCL-5), moral injury (MISS-M-SF), depression (PHQ-9), anxiety (GAD-7), emotional regulation (DERS-18), and resilience (CD-RS-25).

CONCLUSION: The preliminary and exploratory results from this clinical trial support the growing body of literature illustrating 3MDR as an effective treatment for military-related TR-PTSD. These results are notable given participants’ previous lack of success with frontline psychotherapeutic and pharmacological interventions. Given that there are currently very limited treatment options for TR-PTSD, 3MDR could prove to be a valuable treatment option for military members and veterans with TR-PTSD.

PMID:35849703 | DOI:10.1002/brb3.2694