Categories
Nevin Manimala Statistics

Steric control of sorting regimes in self-assembled cages

Chem Commun (Camb). 2021 Nov 10. doi: 10.1039/d1cc05610g. Online ahead of print.

ABSTRACT

Control of self-sorting regimes is achieved through adjustment of steric interactions in self-assembled coordination cages. The self-assembly regime of dynamic mixtures of heteroleptic cages is followed by HPLC to show that statistical or biased distributions can be selectively obtained, including isolation of a single heteroleptic species.

PMID:34755718 | DOI:10.1039/d1cc05610g

Categories
Nevin Manimala Statistics

Omega-3 fatty acids and blood-based biomarkers in Alzheimer’s disease and mild cognitive impairment: A randomized placebo-controlled trial

Brain Behav Immun. 2021 Oct 29;99:289-298. doi: 10.1016/j.bbi.2021.10.014. Online ahead of print.

ABSTRACT

BACKGROUND: Increased serum levels of pro-inflammatory biomarkers are consistently associated with cognitive decline. The omega-3 unsaturated fatty acids (n-3 PUFAs) had been linked to slowing cognitive decline due to their potential anti-inflammatory effects. To our knowledge, the different regiments of pure DHA, pure EPA, and their combination on various associated symptoms of dementia, including a mild form of cognitive impairment (MCI) and Alzheimer’s disease (AD), have never been studied.

METHODS: This multisite, randomized, double-blind, placebo-controlled trial was conducted at two veteran’s retirement centers and one medical center in central Taiwan between 2013 and 2015. 163 MCI or AD patients were randomly assigned to placebo (n = 40), docosahexaenoic acid (DHA, 0.7 g/day, n = 41), eicosapentaenoic acid (EPA, 1.6 g/day, n = 40), or EPA (0.8 g/day) + DHA (0.35 g/day) (n = 42) group for 24 months. The results were measured as the cognitive and functional abilities, biochemical, and inflammatory cytokines profiles. Chi-square tests, two-sample t-test, ANOVA, and linear mixedeffects models were conducted with p < 0.05.

RESULTS: 131 (80%) participants had completed the trial with all cognitive, functional, and mood status assessments. The statistically significant difference between the placebo and treatment groups was not determined, concerning the changes in cognitive, functional, and mood status scores, the biochemical profiles, and inflammatory cytokines levels. However, EPA was found to reduce the C-C motif ligands 4 (CCL4) level (p < 0.001). Additionally, EPA could reduce the constructional praxis (p < 0.05) and spoken language ability scores (p < 0.01), and DHA also reduced the spoken language ability score (p < 0.05).

CONCLUSION: Overall, n-3 PUFAs supplements did not reduce cognitive, functional, and depressive symptom outcomes, but spoken language ability and constructional praxis subitems of ADAS-cog. These findings show that attention to clinical heterogeneity in dementia is crucial when studying nutrients interventions, such as n-3 PUFAs. In addition, with small effect size CCL4 is a better indicator than other inflammatory cytokines for EPA treatment response.

PMID:34755655 | DOI:10.1016/j.bbi.2021.10.014

Categories
Nevin Manimala Statistics

Assessing the dose rate delivery of helical TomoTherapy prostate and head & neck treatments

Biomed Phys Eng Express. 2021 Nov 9. doi: 10.1088/2057-1976/ac37cb. Online ahead of print.

ABSTRACT

The dose rate distributions delivered to 55 prostate and head & neck (H&N) cancer patients treated with a helical TomoTherapy (HT) system were resolved and assessed with regard to pitch and field width defined during treatment planning. Statistical analysis of the studied cases showed that the median treatment delivery time was 4.4 min and 6.3 min for the prostate and H&N cases, respectively. Dose rate volume histogram data for the studied cases showed that the 25% and 12% of the volume of the planning target volumes of the prostate and H&N cases are irradiated with a dose rate of greater or equal to 1 Gy/min. Quartile dose rate (QDR) data confirmed that in HT, where the target is irradiated in slices, most of the dose is delivered to each voxel of the target when it travels within the beam. Analysis of the planning data from all cases showed that this lasts for 68 s (median value). QDRs results showed that using the 2.5 cm field width, 75% of the prescribed dose is delivered to target voxels with a median dose rate of at least 3.2 Gy/min and 4.5 Gy/min, for the prostate and H&N cases, respectively. Systematically higher dose rates were observed for the H&N cases due to the shallower depths of the lesions in this anatomical site. Delivered dose rates were also found to increase with field width and pitch setting, due to the higher output of the system which, in general, results in accordingly decreased total treatment time. The biological effect of the dose rate findings of this work needs to be further investigated using in-vitro studies and clinical treatment data.

PMID:34755680 | DOI:10.1088/2057-1976/ac37cb

Categories
Nevin Manimala Statistics

Analyzing the kinetics of waste plant biomass pyrolysis via thermogravimetry modeling and semi-statistical methods

Bioresour Technol. 2021 Oct 29;344(Pt B):126181. doi: 10.1016/j.biortech.2021.126181. Online ahead of print.

ABSTRACT

This article presents a methodology for determining the kinetic parameters of biomass based on thermogravimetric analysis and the Coats-Redfern procedure with 27 model equations. Maize samples stored for approximately one year were used herein. The first sub-stage of pyrolysis was a first-order reaction with nuclei growth of n = 1, and the second sub-stage indicated a different kinetic order (1.5) of the reaction. The last sub-step showed good convergence with the first-order reaction and nuclei growth of n = 1.5. The activation energy reached up to 71.6 kJ/mol for tżhe selected parts of the stalk fraction, whereas it decreased to 6.5 kJ/mol for the others. A simplified method for approximating the composition of the biomass is also presented. In the composition of stalks, the fraction of hemicellulose was the highest, followed by that of cellulose, whereas in the composition of leaves and whole plant samples, an opposite trend was observed.

PMID:34755652 | DOI:10.1016/j.biortech.2021.126181

Categories
Nevin Manimala Statistics

Gate-tunable charge carrier electrocaloric effect in trilayer graphene

Sci Rep. 2021 Nov 9;11(1):22000. doi: 10.1038/s41598-021-01057-0.

ABSTRACT

The electrocaloric (EC) effect is the change in temperature and entropy of a material driven by the application of an electric field. Our tight-binding calculations linked to Fermi statistics, show that the EC effect can be produced in trilayer graphene (TLG) structures connected to a heat source, triggered by changes in the electronic density of states (DOS) at the Fermi level when external gate fields are applied on the outer graphene layers. We demonstrate that entropy changes are sensitive to the stacking arrangement in TLG systems. The AAA-stacked TLG presents an inverse EC response (cooling) regardless of the temperature value and gate field potential strength, whereas the EC effect in ABC-stacked TLG remains direct (heating) above room temperature. We reveal otherwise the TLG with Bernal-ABA stacking generates both the direct and inverse EC response within the same sample, associated with gate-dependent electronic transitions of thermally excited charge carriers from the valence band to the conduction band in the band structure. The novel charge carrier electrocaloric effect we propose in quantum layered systems may bring a wide variety of prototype van der Waals materials that could be used as versatile platforms to controlling the thermal response in nanodevices.

PMID:34753972 | DOI:10.1038/s41598-021-01057-0

Categories
Nevin Manimala Statistics

Stochastic approach for the material properties of reinforcing textiles for the design of concrete members

Sci Rep. 2021 Nov 9;11(1):21976. doi: 10.1038/s41598-021-01032-9.

ABSTRACT

Textile-reinforced concrete has emerged in recent years as a new and valuable construction material. The design of textile-reinforced concrete requires knowledge on the mechanical properties of different textile types as well as their reinforcing behaviour under different loading conditions. Conventional load-bearing tests tend to be complex, time-consuming, costly and can even lack consistent specifications. To mitigate such drawbacks, a standardised tensile test for fibre strands was used to characterise the material properties needed for the design of a textile-reinforced concrete member. The standardised tensile test uses a fibre strand with 160 mm length, which is cut out of a textile grid. For the sake of this study, an epoxy resin-soaked AR-glass reinforcement was considered. The results show that the textile reinforcement has a linear-elastic behaviour, and the ultimate tensile strength can be statistically modelled by a Gumbel distribution. Furthermore, the results indicate that the modulus of elasticity is not influenced by the length or the number of fibre strands. Therefore, the mean value attained from the standardised test can be used for design purposes. These findings are essential to derive an appropriate partial safety factor for the calculation of the design values of the tensile strength and can be used to determine the failure probability of textile-reinforced concrete members.

PMID:34753961 | DOI:10.1038/s41598-021-01032-9

Categories
Nevin Manimala Statistics

Single nucleotide polymorphisms within HLA region are associated with the outcomes of unrelated cord blood transplantation

Sci Rep. 2021 Nov 9;11(1):21925. doi: 10.1038/s41598-021-01155-z.

ABSTRACT

Cord blood transplantation (CBT) provides a treatment scheme for hematologic diseases and leukemia in both children and adults. However, adverse reactions and transplantation-related death may still occur in patients receiving CBT even when donor and recipient have fully matched HLA in high-resolution HLA typing analysis. Single nucleotide polymorphisms (SNPs) of HLA-related and unrelated genes are known to associate with disease status of patients with unrelated stem cell transplantation. In this study, the genomic regions ranging from 500 base pairs upstream to 500 base pairs downstream of the eight SNPs that were reported as transplantation determinants by Petersdorf et al. were analyzed to evaluate whether genetic variants were associated with the survival status of patients, and the risk for severe (grades 3-4) graft-versus-host disease (GVHD) or cytomegalovirus (CMV) infection/reactivation. The analyses were performed in the mode of recipient genotype, donor genotype, and recipient-donor mismatching, respectively. By analysis of sixty-five patients and their HLA-matched unrelated donors, we found that five SNPs were associated with patient survival which included the recipient genotype with SNPs of rs107822 in the RING1 gene, and rs2070120, rs17220087 and rs17213693 in the HLA-DOB gene; and the recipient-donor mismatching with SNPs of rs9282369 in HLA-DOA gene, and rs2070120, rs17220087 and rs17213693 in the HLA-DOB gene. Five SNPs were associated with the risk for severe GVHD which included the donor genotype with SNPs of rs213210 and rs2523675; the recipient genotype with SNPs of rs9281491 in the HCP5 gene; and the recipient-donor mismatching with SNPs of rs209130 in the TRIM27 gene, and rs986522 in the COL11A2 gene. Six SNPs were related to the risk for CMV infection/reactivation which included the donor genotype with SNPs of rs435766, rs380924, and rs2523957; and the recipient-donor mismatching with SNPs of rs2070120, rs17220087, and rs17213693 in the HLA-DOB gene; and rs435766 and rs380924 in the MICD gene. This study provides the basis for larger analyses and if the results are confirmed, a way of selecting better unrelated CBT candidate donors.

PMID:34753965 | DOI:10.1038/s41598-021-01155-z

Categories
Nevin Manimala Statistics

Laughlin anyon complexes with Bose properties

Nat Commun. 2021 Nov 9;12(1):6477. doi: 10.1038/s41467-021-26873-w.

ABSTRACT

Two-dimensional electron systems in a quantizing magnetic field are regarded as of exceptional interest, considering the possible role of anyons-quasiparticles with non-boson and non-fermion statistics-in applied physics. To this day, essentially none but the fractional states of the quantum Hall effect (FQHE) have been experimentally realized as a system with anyonic statistics. In determining the thermodynamic properties of anyon matter, it is crucial to gain insight into the physics of its neutral excitations. We form a macroscopic quasi-equilibrium ensemble of neutral excitations – spin one anyon complexes in the Laughlin state ν = 1/3, experimentally, where ν is the electron filling factor. The ensemble is found to have such a long lifetime that it can be considered the new state of anyon matter. The properties of this state are investigated by optical techniques to reveal its Bose properties.

PMID:34753935 | DOI:10.1038/s41467-021-26873-w

Categories
Nevin Manimala Statistics

Co-evolution based machine-learning for predicting functional interactions between human genes

Nat Commun. 2021 Nov 9;12(1):6454. doi: 10.1038/s41467-021-26792-w.

ABSTRACT

Over the next decade, more than a million eukaryotic species are expected to be fully sequenced. This has the potential to improve our understanding of genotype and phenotype crosstalk, gene function and interactions, and answer evolutionary questions. Here, we develop a machine-learning approach for utilizing phylogenetic profiles across 1154 eukaryotic species. This method integrates co-evolution across eukaryotic clades to predict functional interactions between human genes and the context for these interactions. We benchmark our approach showing a 14% performance increase (auROC) compared to previous methods. Using this approach, we predict functional annotations for less studied genes. We focus on DNA repair and verify that 9 of the top 50 predicted genes have been identified elsewhere, with others previously prioritized by high-throughput screens. Overall, our approach enables better annotation of function and functional interactions and facilitates the understanding of evolutionary processes underlying co-evolution. The manuscript is accompanied by a webserver available at: https://mlpp.cs.huji.ac.il .

PMID:34753957 | DOI:10.1038/s41467-021-26792-w

Categories
Nevin Manimala Statistics

Widespread attenuating changes in brain connectivity associated with the general factor of psychopathology in 9- and 10-year olds

Transl Psychiatry. 2021 Nov 9;11(1):575. doi: 10.1038/s41398-021-01708-w.

ABSTRACT

Convergent research identifies a general factor (“P factor”) that confers transdiagnostic risk for psychopathology. Large-scale networks are key organizational units of the human brain. However, studies of altered network connectivity patterns associated with the P factor are limited, especially in early adolescence when most mental disorders are first emerging. We studied 11,875 9- and 10-year olds from the Adolescent Brain and Cognitive Development (ABCD) study, of whom 6593 had high-quality resting-state scans. Network contingency analysis was used to identify altered interconnections associated with the P factor among 16 large-scale networks. These connectivity changes were then further characterized with quadrant analysis that quantified the directionality of P factor effects in relation to neurotypical patterns of positive versus negative connectivity across connections. The results showed that the P factor was associated with altered connectivity across 28 network cells (i.e., sets of connections linking pairs of networks); pPERMUTATION values < 0.05 FDR-corrected for multiple comparisons. Higher P factor scores were associated with hypoconnectivity within default network and hyperconnectivity between default network and multiple control networks. Among connections within these 28 significant cells, the P factor was predominantly associated with “attenuating” effects (67%; pPERMUTATION < 0.0002), i.e., reduced connectivity at neurotypically positive connections and increased connectivity at neurotypically negative connections. These results demonstrate that the general factor of psychopathology produces attenuating changes across multiple networks including default network, involved in spontaneous responses, and control networks involved in cognitive control. Moreover, they clarify mechanisms of transdiagnostic risk for psychopathology and invite further research into developmental causes of distributed attenuated connectivity.

PMID:34753911 | DOI:10.1038/s41398-021-01708-w