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Nevin Manimala Statistics

Identifying joint-specific gait mechanisms causing impaired gait in alkaptonuria patients

Gait Posture. 2021 Oct 27;91:312-317. doi: 10.1016/j.gaitpost.2021.10.034. Online ahead of print.

ABSTRACT

BACKGROUND: Alkaptonuria is a rare genetic disease that leads to structural joint damage and impaired movement function. Previous research indicates that alkaptonuria affects gait, however the detailed mechanisms are unknown.

RESEARCH QUESTION: What are the joint-specific gait mechanisms which contribute to impaired gait in alkaptonuria patients?

METHODS: The gait of 36 alkaptonuria patients were compared to those of 21 unimpaired controls. The AKU patients were split into three age groups (young 16-29 years, n = 9, middle 30-49 years, n = 16 and old 50 + years, n = 11), and the kinematic and kinetic gait profiles were compared to speed-matched controls using a spm1d two-sample t-test.

RESULTS: The young AKU group showed significant differences in the sagittal plane of the knee joint compared to speed-matched controls. The middle group showed deviations in the knee and hip joints. The old group showed significant differences in multiple joints and planes and exhibited gait mechanisms which may be compensation strategies.

SIGNIFICANCE: This study is the first to identify and describe joint-specific mechanisms during gait in alkaptonuria patients. Gait deviations were evident even in young AKU patients, including a 16-year-old, much earlier than previously thought. The knee joint is an important focus of future research and potential interventions as deviations were found across all three AKU age groups.

PMID:34800924 | DOI:10.1016/j.gaitpost.2021.10.034

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Nevin Manimala Statistics

The role of tricuspite annular plane systolic excursion as a marker of hypovolemia in healthy blood donor volunteers

Am J Emerg Med. 2021 Oct 23;51:320-324. doi: 10.1016/j.ajem.2021.10.028. Online ahead of print.

ABSTRACT

AIM: The aim of this study is to compare the diameter of the inferior vena cava with tricuspid annular plane systolic excursion (TAPSE) measurement in order to determine the volume loss before and after blood donation in healthy volunteers.

METHODS: This Institutional Review Board-approved single center, prospective, cross-sectional study included 60 healthy blood donors donating in a tertiary care hospital’s blood bank. After obtaining written consent, systolic, diastolic, and mean arterial blood pressures along with pulse rate of the donors were measured in sitting and supine positions by the attending physician, then, inferior vena cava (IVC) and TAPSE measurements were made before and after blood donation.

RESULTS: Statistically significant differences was found between standing systolic blood pressure and pulse rate, lying systolic blood pressure and pulse rate, IVC and TAPSE values before and after blood donation (p < 0.05). There was no difference between the other variables before and after blood donation.

CONCLUSION: Our study revealed that, low IVC and TAPSE values correlated in determining blood loss after blood donation. TAPSE may be useful to predict blood loss in early stages of hypovolemic shock.

PMID:34800904 | DOI:10.1016/j.ajem.2021.10.028

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Nevin Manimala Statistics

Estimation of stature and body weight from static and dynamic footprints – Forensic implications and validity of non-colouring cream method

Forensic Sci Int. 2021 Nov 14;330:111105. doi: 10.1016/j.forsciint.2021.111105. Online ahead of print.

ABSTRACT

In the present study, the metric properties of dynamic footprints were analysed using non-colouring method in relation with body parameters and compared with static footprint measurements. The results of the study provide a better understanding of the relationship between static and dynamic footprints, which may be useful for biological profiling that allows more accurate identification. Stature, body weight, five length and two width parameters of dynamic (walking) footprints of young Slovak adults (65 females and 68 males) were analysed. Pearson correlation coefficients were calculated and equations for prediction of stature and body weight by linear regression analysis and multiple regression analysis were developed. Intersex differences were confirmed for all parameters and bilateral for some. Statistically significant differences were found in all measurements (p-value>0.05), except for the width of the standing and walking footprint in the mixed group. A positive correlation was found between the selected footprint diameters with stature (max – r = 0.82) and body weight (max – r = 0.70). Stature could be calculated with an accuracy of up to 4.40 cm and body weight with an accuracy of up to 9.56 kg. The results of the present study show that selected measurements of dynamic footprints correlate with stature and body weight. These results could be used in biological profiling in the medical and forensic fields.

PMID:34800909 | DOI:10.1016/j.forsciint.2021.111105

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Nevin Manimala Statistics

The protective effects of quercetin nano-emulsion on intestinal mucositis induced by 5-fluorouracil in mice

Biochem Biophys Res Commun. 2021 Nov 11;585:75-81. doi: 10.1016/j.bbrc.2021.11.005. Online ahead of print.

ABSTRACT

BACKGROUND: Intestinal mucositis is one of chemotherapeutics’ most common adverse effects, such as 5-fluorouracil (5-FU). Quercetin (QRC), a naturally occurring flavonoid, has approved antioxidant and anti-inflammatory properties. Thus, in this article, the preventive and curative effects of emulsion and nano-emulsion formulations of QRC were investigated in a model of 5-FU-induced intestinal mucositis using biochemical, histopathological, and molecular approaches.

METHOD: Thirty-six mice were divided into six different groups: Control (normal saline), 5-FU (a single dose of 5-FU 300 mg/kg), pre-treatment groups (pre-QRC, and pre-QRC-nano, receiving QRC 5 mg/kg emulsion and nano-emulsion before the induction of mucositis, respectively), and post-treatment groups (post-QRC, and post-QRC-nano, receiving QRC 5 mg/kg emulsion and nano-emulsion after the induction of mucositis, respectively).

FINDING: The administration of quercetin emulsion and nano-emulsion could significantly alleviate the oxidant-antioxidant balance of mice serum samples and reverse the destructive histopathologic changes induced by 5-FU in the intestine tissue. Nevertheless, although the expression of both pro-inflammatory genes, NF-κB and HIF-1α, was decreased when quercetin was administered to mice, this reduction was not statistically significant.

CONCLUSION: The administration of quercetin emulsion and nano-emulsion formulations could ameliorate the oxidative damage induced by chemotherapeutics, such as the 5-FU. Therefore, if confirmed in further studies, it could be used in clinical settings as a preventive and curative agent to decrease such catastrophic adverse events in chemotherapy patients.

PMID:34800883 | DOI:10.1016/j.bbrc.2021.11.005

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Nevin Manimala Statistics

The impacts of the Free Semester program on students’ exam nervousness

Econ Hum Biol. 2021 Nov 8;44:101079. doi: 10.1016/j.ehb.2021.101079. Online ahead of print.

ABSTRACT

I examine the impacts of the Free Semester (FS) program, which is an exam-free semester for middle school students in South Korea, on students’ level of exam nervousness. I use a difference-in-differences approach that exploits the variation in FS-implementation across middle schools to estimate these impacts. I find that the FS program has statistically significant impacts on relieving exam nervousness during the semester in which it is run. In contrast, I find no statistically significant average medium-run impacts of the program. My subgroup analyses suggest that the reduction in exam nervousness during the FS is driven largely by high-achieving students.

PMID:34800899 | DOI:10.1016/j.ehb.2021.101079

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Nevin Manimala Statistics

Model-based adaptive filter for a dedicated cardiovascular CT scanner: Assessment of image noise, sharpness and quality

Eur J Radiol. 2021 Nov 15;145:110032. doi: 10.1016/j.ejrad.2021.110032. Online ahead of print.

ABSTRACT

BACKGROUND: Filtered back projection (FBP) and adaptive statistical iterative reconstruction (ASIR) are ubiquitously applied in the reconstruction of coronary CT angiography (CCTA) datasets. However, currently no data is available on the impact of a model-based adaptive filter (MBAF2), recently developed for a dedicated cardiac scanner.

PURPOSE: Our aim was to determine the effect of MBAF2 on subjective and objective image quality parameters of coronary arteries on CCTA.

METHODS: Images of 102 consecutive patients referred for CCTA were evaluated. Four reconstructions of coronary images (FBP, ASIR, MBAF2, ASIR + MBAF2) were co-registered and cross-section were assessed for qualitative (graininess, sharpness, overall image quality) and quantitative [image noise, signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR)] image quality parameters. Image noise and signal were measured in the aortic root and the left main coronary artery, respectively. Graininess, sharpness, and overall image quality was assessed on a 4-point Likert scale.

RESULTS: As compared to FBP, ASIR, and MBAF2, ASIR + MBAF2 resulted in reduced image noise [53.1 ± 12.3, 30.6 ± 8.5, 36.3 ± 4.2, 26.3 ± 4.0 Hounsfield units (HU), respectively; p < 0.001], improved SNR (8.4 ± 2.6, 14.1 ± 3.6, 11.8 ± 2.3, 16.3 ± 3.3 HU, respectively; p < 0.001) and CNR (9.4 ± 2.7, 15.9 ± 4.0, 13.3 ± 2.5, 18.3 ± 3.5 HU, respectively; p < 0.001). No difference in sharpness was observed amongst the reconstructions (p = 0.08). Although ASIR + MBAF2 was non-superior to ASIR regarding overall image quality (p = 0.99), it performed better than FBP (p < 0.001) and MBAF2 (p < 0.001) alone.

CONCLUSION: The combination of ASIR and MBAF2 resulted in reduced image noise and improved SNR and CNR. The implementation of MBAF2 in clinical practice may result in improved noise reduction performance and could potentiate radiation dose reduction.

PMID:34800835 | DOI:10.1016/j.ejrad.2021.110032

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Nevin Manimala Statistics

Comparison of time-to-event machine learning models in predicting oral cavity cancer prognosis

Int J Med Inform. 2021 Nov 14;157:104635. doi: 10.1016/j.ijmedinf.2021.104635. Online ahead of print.

ABSTRACT

BACKGROUND: Applying machine learning to predicting oral cavity cancer prognosis is important in selecting candidates for aggressive treatment following diagnosis. However, models proposed so far have only considered cancer survival as discrete rather than dynamic outcomes.

OBJECTIVES: To compare the model performance of different machine learning-based algorithms that incorporate time-to-event data. These algorithms included DeepSurv, DeepHit, neural net-extended time-dependent cox model (Cox-Time), and random survival forest (RSF).

MATERIALS AND METHODS: Retrospective cohort of 313 oral cavity cancer patients were obtained from electronic health records. Models were trained on patient data following preprocessing. Predictors were based on demographic, clinicopathologic, and treatment information of the cases. Outcomes were the disease-specific and overall survival. Multivariable analyses were conducted to select significant prognostic features associated with tumor prognosis. Two models were generated per algorithm based on all-prognostic features and significant-prognostic features following statistical analysis. Concordance index (c-index) and integrated Brier scores were used as performance evaluators and model stability was assessed using intraclass correlation coefficients (ICC) calculated from these measures obtained from the cross-validation folds.

RESULTS: While all models were satisfactory, better discriminatory performance and calibration was observed for disease-specific than overall survival (mean c-index: 0.85 vs 0.74; mean integrated Brier score: 0.12 vs 0.17). DeepSurv performed best in terms of discrimination for both outcomes (c-indices: 0.76 -0.89) while RSF produced better calibrated survival estimates (integrated Brier score: 0.06 -0.09). Model stability of the algorithms varied with the outcomes as Cox-Time had the best intraclass correlation coefficient (mean ICC: 1.00) for disease-specific survival while DeepSurv was most stable for overall survival prediction (mean ICC: 0.99).

CONCLUSIONS: Machine learning algorithms based on time-to-event outcomes are successful in predicting oral cavity cancer prognosis with DeepSurv and RSF producing the best discriminative performance and calibration.

PMID:34800847 | DOI:10.1016/j.ijmedinf.2021.104635

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Nevin Manimala Statistics

A novel event-related fMRI supervoxels-based representation and its application to schizophrenia diagnosis

Comput Methods Programs Biomed. 2021 Nov 6;213:106509. doi: 10.1016/j.cmpb.2021.106509. Online ahead of print.

ABSTRACT

BACKGROUND AND OBJECTIVE: The schizophrenia diagnosis represents a difficult task because of the confusing descriptions of symptoms given by the patient, their similarity among several disorders, the lower familiarity with genetic predisposition, and the probably inadequate response to the treatment. Neuro-biological markers of schizophrenia, as a quantitative relationship between the psychiatrist’s reports and the biology of the brain, could be used. Functional Magnetic Resonance Imaging (fMRI) obtain the subject’s performance in cognitive tasks and may find significant differences between the patient’s data and controls. The input data of classifiers may imply alterations in diagnosis; therefore, it is essential to ensure an adequate representation to describe the entire dataset classified.

METHODS: We propose a supervoxels-based representation calculated by two main steps: the short-range connectivity, supervoxels’ generation using a Fuzzy Iterative Clustering algorithm, and the long-range connectivity, employing Detrended Cross-Correlation Analysis among supervoxels. The unrelated supervoxels, through a statistical test based on critical points calculated empirically, are removed. The remainder supervoxels are the input for feature selectors to extract the discriminative supervoxels. We implement support vector machine classifiers using the correlation coefficient of the significant supervoxels. The dataset of 1.5 Tesla was downloaded from the SchizConnect site, where the fMRI data, during an auditory oddball task, was acquired. We calculate the performance of the classifiers using a leave-one-out cross-validation and compute the area under the Receiver Operating Characteristic curve and a permutation test to ensure no bias in the classifiers.

RESULTS: According to the permutation test, with p-values less than the significance level of 0.05, the classifiers extract discriminative class structure from data where no bias is shown. Our supervoxels-based representation gets the maximum values of sensitivity, specificity, and accuracy of 92.9%, 100%, and 96.4%, respectively. The discriminative brain regions, to discern among patients and controls, are extracted; these regions also are mentioned by the related works.

CONCLUSIONS: The proposed representation, based on supervoxels, is a data-driven model that does not use predefined models of the signal nor pre-relocated brain regions of interest. The results are competitive against the related works, and the relevant supervoxels are related to the schizophrenia diagnosis.

PMID:34800805 | DOI:10.1016/j.cmpb.2021.106509

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Nevin Manimala Statistics

How Economic Analysis Increases the Awareness of Clinical Services: A Case of Diabetes Mellitus at a Teaching Hospital in Myanmar

Value Health Reg Issues. 2021 Nov 17;29:21-27. doi: 10.1016/j.vhri.2021.09.001. Online ahead of print.

ABSTRACT

OBJECTIVES: Myanmar faces a growing epidemic of type 2 diabetes mellitus, which has significant impact on the individual health and health service system; nevertheless, reliable cost estimate for treating diabetes is still unknown. Therefore, this study aimed to explore the treatment cost of hospitalization by type 2 diabetes mellitus and the association of complications and comorbidities with the treatment cost.

METHODS: The retrospective incidence-based cost of illness analysis was performed at the diabetes ward of 800-bed teaching hospital in Yangon, Myanmar. The data were retrieved from hospital financial reports and patient’s medical records for the fiscal year 2017 to 2018. Data was analyzed by using descriptive statistics and multivariate statistics. One-way sensitivity analysis was used to assess the uncertainty of input parameters.

RESULTS: This study involved 87 inpatients with type 2 diabetes mellitus with an average length of stay of 16.1 ± 12.6 days. Of the study sample, 67% had complications whereas 74% had comorbidities. The average treatment cost per admission was $718.7 (equal to 58% of gross domestic product – GDP per capita) at 2018 prices. Based on the multiple regression analysis, cost savings per admission were $276.5, $307.3, and $319.5 from preventing foot ulcer, nephropathy, and retinopathy, respectively.

CONCLUSIONS: This study found that the treatment of diabetes is costly because of its preventable health consequences. Better disease management to prevent complications results in considerable cost savings. This quantitative evidence would increase awareness in health service system.

PMID:34800825 | DOI:10.1016/j.vhri.2021.09.001

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Nevin Manimala Statistics

Acquisition of Surgical Skills in Medical Students via Telementoring: A Randomized Control Trial

J Surg Res. 2021 Nov 17;270:471-476. doi: 10.1016/j.jss.2021.10.007. Online ahead of print.

ABSTRACT

BACKGROUND: Pandemic related changes have radically altered the delivery of medical teaching. The practical skills of medicine which students should be proficient in at time of graduation have tended to require in-person tutelage, with reduced access resulting in the risk of skill deficits in newly qualified doctors. Small group teaching sessions are amenable to a virtual mode of delivery, with the ability of the virtual platform to confer practical skills unproven. The objective of the study was to evaluate the use of teleproctoring in acquisition of suturing skills in medical students.

METHODS: This was a single blinded two- armed randomized control trial. Medical students undergoing clinical rotations in their penultimate and final years who were able to complete the suturing tutorial were invited to participate in this study. Control groups underwent conventional suturing training under direct supervision, with the interventional group undergoing the tutorial in a remote learning setting via live streaming. Pre- and post-test assessment was carried out using validated suturing Global Rating Scale tool.

RESULTS: A total of 24 participants were recruited, with 23 participants completing the task. Adequacy of sampling was demonstrated in both groups using Box’s M test (P = 0.9). Participants’ individual and composite scores were comparable at baseline (P = 0.28) and following the tutorial (P = 0.52). Participants improved to a statistically significant degree regardless of method of teaching delivery, in all skill parameters (P < 0.001).

CONCLUSIONS: Teleproctoring is an effective tool in the provision of teaching basic suturing skills in medical students. Research on its use in more complex practical skills is warranted.

PMID:34800793 | DOI:10.1016/j.jss.2021.10.007