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Nevin Manimala Statistics

Overcoming attenuation bias in regressions using polygenic indices

Nat Commun. 2023 Jul 25;14(1):4473. doi: 10.1038/s41467-023-40069-4.

ABSTRACT

Measurement error in polygenic indices (PGIs) attenuates the estimation of their effects in regression models. We analyze and compare two approaches addressing this attenuation bias: Obviously Related Instrumental Variables (ORIV) and the PGI Repository Correction (PGI-RC). Through simulations, we show that the PGI-RC performs slightly better than ORIV, unless the prediction sample is very small (N < 1000) or when there is considerable assortative mating. Within families, ORIV is the best choice since the PGI-RC correction factor is generally not available. We verify the empirical validity of the simulations by predicting educational attainment and height in a sample of siblings from the UK Biobank. We show that applying ORIV between families increases the standardized effect of the PGI by 12% (height) and by 22% (educational attainment) compared to a meta-analysis-based PGI, yet estimates remain slightly below the PGI-RC estimates. Furthermore, within-family ORIV regression provides the tightest lower bound for the direct genetic effect, increasing the lower bound for the standardized direct genetic effect on educational attainment from 0.14 to 0.18 (+29%), and for height from 0.54 to 0.61 (+13%) compared to a meta-analysis-based PGI.

PMID:37491308 | DOI:10.1038/s41467-023-40069-4

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Nevin Manimala Statistics

Implementation of mind mapping with problem-based learning in prosthodontics course for Chinese dental students

BMC Med Educ. 2023 Jul 25;23(1):530. doi: 10.1186/s12909-023-04479-8.

ABSTRACT

BACKGROUND: The traditional Chinese dentistry classroom teaching model focuses on the instruction of knowledge details, but less on the frameworks and learners’ motivation. Here, we introduced a combination of mind mapping and PBL instruction (MBL)into the prosthodontics course for Chinese dental students. This study aimed to evaluate the effectiveness and efficiency of MBL in prosthodontics and make observations from the students’ perspectives, based on their response with the learning process.

METHODS: We prospectively enrolled 56 fourth-year undergraduates of stomatology, and these participants were randomly allocated into either the combined mind map teaching group (MBL) or the problem-based learning group (PBL) to attend the prosthodontics course. An anonymous questionnaire was also administered to both groups to evaluate the students’ perceptions and experiences, using closed and open-ended items. Data were analyzed using descriptive statistics and thematic analysis.

RESULTS: The students’ responses to closed items indicate their experience in PBL and MBL to be positive, including increased motivation, improved memory of knowledge, enhanced discipline connection and raised teamwork, with fairly higher ratings for the MBL group. However, the tutor-guided competence scores including the memory and framework part, were significantly higher for MBL group than PBL group (two-way ANOVA, p < 0.01, p < 0.001, respectively). Meanwhile, the self-perceived competence scores including the motivation, framework and teamwork part, were significantly higher for MBL group than PBL group (two-way ANOVA, p < 0.01, p < 0.001, p < 0.05, respectively).

CONCLUSION: Our findings suggest that MBL teaching approach can help in integration of knowledge structure and enhance clinical reasoning. MBL is an effective and well-organized method in prosthodontics course for dental students.

PMID:37491283 | DOI:10.1186/s12909-023-04479-8

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Nevin Manimala Statistics

Estimating marksmanship performance during walking while maintaining weapon aim

Appl Ergon. 2023 Jul 23;113:104096. doi: 10.1016/j.apergo.2023.104096. Online ahead of print.

ABSTRACT

Marksmanship performance while moving is a critical skill among tactical athletes due to the high demands of their occupational duties. Qualifications for dynamic marksmanship performance are not standardized across tactical athlete groups, which may limit comprehensive assessment of tactical athlete performance for situational awareness and adaptability to an unpredictable environment. Although static marksmanship performance provides foundational information on skills and level of ability, research is lacking on factors that influence dynamic marksmanship performance to best prepare tactical athletes for duties. The purpose of this study was to identify whether static marksmanship performance, speed of movement, load carriage, and biomechanical factors while ‘shooting on the move’ influenced dynamic marksmanship performance. Twenty-four male tactical athletes (22 active-duty Army Soldiers, two civilian SWAT operators; age: 23.83 ± 5.47 years; height: 1.80 ± 0.08 m; weight: 81.04 ± 7.87 kg) participated; final analyses did not include data from the two civilian operators to maintain sample homogeneity. Tactical athletes completed static and dynamic (‘shoot on the move’) marksmanship tasks under three load conditions: (1) no load (NL), (2) half kit (HK) of 11.34 kg, and (3) full kit (KIT) of 22.68 kg. Dynamic marksmanship was completed under three speed conditions: (1) self-selected slow speed, (2) standard speed, and (3) self-selected fast speed. Hip, knee, and ankle kinematics were collected via wireless inertial measurement units. Spatiotemporal parameters were collected via optical detection system. Marksmanship performance (accuracy) was collected via open-air acoustic target scoring and mean radial error (MRE) was calculated for both static and dynamic marksmanship tasks. Linear mixed-effects models were fit with dynamic MRE as the outcome variable with fixed effects of static MRE, load condition, speed condition, kinematics, and spatiotemporal parameters, adjusting for body mass. Alpha level was set a priori at p ≤ 0.10. The final statistical model included fixed effects of static MRE, load condition, speed condition, and time spent in double limb support. Static MRE (p < 0.01) and time spent in double limb support (p = 0.01) were significant factors. For each 1 cm increase in static MRE there was a 0.66 cm increase in dynamic MRE. For every 1% increase in time spent in double limb support while ‘shooting on the move’ there was a 0.13 cm increase in dynamic MRE. Findings from this study highlight that tactical athletes who have larger static stance MRE and spend a longer time in double limb support during a gait cycle exhibit an increase in MRE during ‘shoot on the move’ trials. Overall, dynamic shooting accuracy is not affected by lower extremity joint angles, load carriage, or speed of movement. Although strong relationships are known between gait speed, load, and lower extremity kinematics, the differences in tactical gait compared to normal gait and multi-task paradigm that likely favors marksmanship accuracy seem to present novel movement characteristics unique to occupational gait. Further investigation is warranted to identify other potential factors that may improve or worsen dynamic marksmanship performance.

PMID:37490790 | DOI:10.1016/j.apergo.2023.104096

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Nevin Manimala Statistics

Inhibition of Aspergillus carbonarius growth and Ochratoxin A production using lactic acid bacteria cultivated in an optimized medium

Int J Food Microbiol. 2023 Jul 18;404:110320. doi: 10.1016/j.ijfoodmicro.2023.110320. Online ahead of print.

ABSTRACT

The Gram-positive bacteria lactic acid bacteria (LAB) are used in the food industry but are also known for inhibiting certain food spoilage microorganisms, especially fungi. Sources of nitrogen (N) for culture media are generally organic and expensive. Many attempts have been made to formulate economical culture media with alternative N sources obtained from agricultural and industrial byproducts. This study describes the design and optimization of an inexpensive culture medium for Lactiplantibacillus plantarum (formerly Lactobacillus plantarum) MZ809351 strain B31. The culture medium was optimized using statistical experimental designs to identify the factors with the most significant effects on biomass concentration to reduce the overall cost, aiming to obtain a biomass concentration similar to that obtained with the reference LAB culture medium (de Man, Rogosa and Sharpe; MRS). Sodium acetate and magnesium sulfate were the most significant factors (p < 0.005), and their contents were reduced by 22 % and 40 %, respectively, without affecting biomass concentration. Malt germ extract (MGE) was used as an alternative nitrogen source to replace meat extract (ME) and proteose peptone (PP). Through these experiments, the composition of a culture medium that is less expensive than MRS broth was defined, which produced a biomass concentration (3.8 g/L) similar to that obtained with MRS medium. The inhibitory effects of two LAB strains isolated from the Ivory Coast and Mexico on the growth and production of ochratoxin A (OTA) in an ochratoxigenic fungus was tested. The minimum cellular concentration of the LAB to prevent the development of Aspergillus carbonarius Ac 089 and the production of OTA was determined in a model assay in Petri dishes. The conditions to inhibit the germination of A. carbonarius Ac 089 and the production of OTA were found. Using the optimized medium and a ratio of 2 × 104 LAB/spore (1 × 108 CFU/mL) strain B7 (L. plantarum MZ809351) and 2 × 103 LAB/spore (1 × 107 CFU/mL) strain B31 (L. plantarum MN922335) completely inhibited the growth of the fungus. A ratio of 2 × 105 LAB/spore (1 × 109 CFU/mL) was required to inhibit OTA production with strains B7 and B31. This study indicates the potential of cultivating LAB in an optimized and inexpensive culture medium for use as a biological control agent against ochratoxigenic fungi in food.

PMID:37490784 | DOI:10.1016/j.ijfoodmicro.2023.110320

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Nevin Manimala Statistics

Polypill-Based Strategy versus Usual Care for Secondary Prevention of Cardiovascular Disease: A Meta-Analysis of Randomised Controlled Trials

Eur J Prev Cardiol. 2023 Jul 25:zwad245. doi: 10.1093/eurjpc/zwad245. Online ahead of print.

ABSTRACT

AIM: We aimed to perform a systematic review and meta-analysis of randomised controlled trials (RCTs) to determine the impact of a polypill-based strategy (PBS) on therapeutic adherence and cardiovascular outcomes compared with usual care for secondary prevention of cardiovascular diseases (CVD).

METHODS: We systematically searched PubMed, Cochrane, and Scopus databases from inception to January 2023, including RCTs comparing PBS to usual care in patients with prior CVD. We assessed efficacy outcomes of therapeutic adherence, systolic blood pressure (SBP) and low-density lipoprotein-cholesterol (LDL-C), and safety outcomes of all-cause and cardiovascular mortality. Statistical analysis was performed with Review Manager 5.4.1 and R Version 4.2.1.

RESULTS: A total of eight RCTs with a population of 6,541 individuals were included, of whom 3,318 (50.7%) were treated with PBS. Follow-up ranged from 6 to 60 months. PBS was associated with a significantly increased therapeutic adherence (risk ratio [RR] 1.22; 95% CI 1.10 to 1.34; p<0.001). Cardiovascular mortality (RR 0.61; 95% CI 0.44 to 0.85; p=0.004), SBP (mean difference [MD] -1.47 mmHg; 95% CI -2.86 to -0.09; p=0.04), and LDL-C (MD -3.83 mg/dL; 95% CI -6.99 to -0.67; p=0.02) were significantly lower in PBS group. The incidence of all-cause mortality was similar between groups (RR 0.83; 95% CI 0.54 to 1.29; p=0.41).

CONCLUSIONS: In patients with pre-existing CVD, a PBS is associated with lower cardiovascular mortality and improved therapeutic adherence, along with a modest decrease in SBP and LDL-C compared with usual care. Thus, PBS may be considered a preferred option for this patient population.

PMID:37490769 | DOI:10.1093/eurjpc/zwad245

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Nevin Manimala Statistics

Impact of the Introduction of a Package of Diagnostic Tools, Diagnostic Algorithm, and Training and Communication on Outpatient Acute Fever Case Management at 3 Diverse Sites in Uganda: Results of a Randomized Controlled Trial

Clin Infect Dis. 2023 Jul 25;77(Supplement_2):S156-S170. doi: 10.1093/cid/ciad341.

ABSTRACT

BACKGROUND: Increasing trends of antimicrobial resistance are observed around the world, driven in part by excessive use of antimicrobials. Limited access to diagnostics, particularly in low- and middle-income countries, contributes to diagnostic uncertainty, which may promote unnecessary antibiotic use. We investigated whether introducing a package of diagnostic tools, clinical algorithm, and training-and-communication messages could safely reduce antibiotic prescribing compared with current standard-of-care for febrile patients presenting to outpatient clinics in Uganda.

METHODS: This was an open-label, multicenter, 2-arm randomized controlled trial conducted at 3 public health facilities (Aduku, Nagongera, and Kihihi health center IVs) comparing the proportions of antibiotic prescriptions and clinical outcomes for febrile outpatients aged ≥1 year. The intervention arm included a package of point-of-care tests, a diagnostic and treatment algorithm, and training-and-communication messages. Standard-of-care was provided to patients in the control arm.

RESULTS: A total of 2400 patients were enrolled, with 49.5% in the intervention arm. Overall, there was no significant difference in antibiotic prescriptions between the study arms (relative risk [RR]: 1.03; 95% CI: .96-1.11). In the intervention arm, patients with positive malaria test results (313/500 [62.6%] vs 170/473 [35.9%]) had a higher RR of being prescribed antibiotics (1.74; 1.52-2.00), while those with negative malaria results (348/688 [50.6%] vs 376/508 [74.0%]) had a lower RR (.68; .63-.75). There was no significant difference in clinical outcomes.

CONCLUSIONS: This study found that a diagnostic intervention for management of febrile outpatients did not achieve the desired impact on antibiotic prescribing at 3 diverse and representative health facility sites in Uganda.

PMID:37490746 | DOI:10.1093/cid/ciad341

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Nevin Manimala Statistics

Synthesis and Meta-analysis of 3 Randomized Trials Conducted in Burkina Faso, Ghana, and Uganda Comparing the Effects of Point-of-Care Tests and Diagnostic Algorithms Versus Routine Care on Antibiotic Prescriptions and Clinical Outcomes in Ambulatory Patients <18 Years of Age With Acute Febrile Illness

Clin Infect Dis. 2023 Jul 25;77(Supplement_2):S199-S205. doi: 10.1093/cid/ciad324.

NO ABSTRACT

PMID:37490743 | DOI:10.1093/cid/ciad324

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Nevin Manimala Statistics

Testing the effectiveness of two psychosocial interventions – ACCENT and Didactic – to prevent HIV/AIDS behavioral risk factors in Mozambican women: a randomized controlled study

AIDS Care. 2023 Jul 25:1-8. doi: 10.1080/13548506.2023.2229236. Online ahead of print.

ABSTRACT

In Mozambique, women are the most affected by HIV/AIDS and heterosexual encounters remain the main route for HIV/AIDS. Condom use is the most effective method of HIV/AIDS prevention, and the intention to use and buy/get condoms has a significant role in safe sex behavior. This study aimed to evaluate the efficacy of two psychosocial interventions – the Didactic and ACCENT Interventions – to prevent HIV/AIDS among Mozambican Women. Participants were Mozambican women (n = 150), users of the gynecology clinic of the Central Hospital of Beira. The study design was a randomized controlled trial (RCT) with assignment to three groups: Didactic intervention, ACCENT intervention, and Control group. Measures were from an adaption of the Women’s Health Questionnaire, which includes questions about sociodemographic, clinical, and behavioral variables related to HIV prevention/risk. There was a significant group effect on condom use and safer sex preparatory behaviors, F(2, 146) = 6.45, p = .002, with Bonferroni post-hoc tests showing differences between the ACCENT vs. Control groups and ACCENT vs. Didactic groups (all p = .022). There were no statistically significant time effects on both condom use and safer sex preparatory behaviors. Results are promising for HIV/AIDS prevention in Mozambican women at sexual risk, but replication is needed for generalizability of findings.

PMID:37490699 | DOI:10.1080/13548506.2023.2229236

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Nevin Manimala Statistics

Efficacy and safety of non-immunogenic staphylokinase in the ischemic stroke in real-world clinical practice in the Sverdlovsk region

Zh Nevrol Psikhiatr Im S S Korsakova. 2023;123(7):74-79. doi: 10.17116/jnevro202312307174.

ABSTRACT

OBJECTIVE: To compare the efficacy and safety of non-immunogenic staphylokinase (Fortelysine) and alteplase in patients with ischemic stroke (IS) in real-world clinical practice.

MATERIAL AND METHODS: A retrospective, observational, non-interventional study of data the register of the Territorial Compulsory Health Insurance Fund was conducted. The proportion of patients with a favorable outcome, the degree of disability at discharge from the hospital, the duration of hospitalization, the proportion of lethal outcome in the groups of Fortelysine and alteplase were evaluated. The effect of the Rankin scale points at the hospitalization, the choice of a medical organization, the month of hospitalization, the choice of a thrombolytic on achieving a favorable outcome was determined.

RESULTS: The data of 1238 patients from 26 hospitals of the Sverdlovsk region were included. There were no statistically significant differences in the proportion of a favorable outcome between the groups of Fortelysine and alteplase (26% and 25% respectively, p=0.845). Mediana of duration of hospitalization in the Fortelysine group was one day less, which is statistically significant compared to the alteplase group (9 [7;12] and 10 [7;13] respectively, p<0.001). There were no differences in the frequency of mortality (11% and 13% respectively, p=0.331). The hospital, the year and month of hospitalization, the level of disability at the baseline have a statistically significant effect on the outcome of hospitalization. The choice of a thrombolytic drug did not have a statistically significant effect on the frequency of favorable outcome.

CONCLUSIONS: The comparable efficacy and safety of Fortelysine and alteplase in IS has been proven in clinical study and confirmed by real-world clinical practice.

PMID:37490668 | DOI:10.17116/jnevro202312307174

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Nevin Manimala Statistics

Treatment of cognitive, behavioral and mental disorders in patients with vascular dementia: results of a multicenter, randomized, double-blind, placebo-controlled clinical trial

Zh Nevrol Psikhiatr Im S S Korsakova. 2023;123(7):41-49. doi: 10.17116/jnevro202312307141.

ABSTRACT

OBJECTIVE: Evaluation of the efficacy and safety of Prospect in the treatment of cognitive, behavioral and mental disorders in patients with vascular dementia (VSD).

MATERIAL AND METHODS: In a double-blind, placebo-controlled, parallel-group randomised clinical trial, 406 patients aged 60-85 years old with a diagnosis of mild/moderate vascular dementia (10-24 on the Mini-Mental State Examination (MMSE)) and without signs of depression (Cornell Scale for Depression in Dementia (CSDD) scores ≤10) were included. At Visit 1, complaints and medical history were collected, vital signs were recorded, cognitive impairment was assessed using MMSE and MoCA, NPI-C and CSDD were completed, and an MRI brain scan was performed. Patients were randomised into two groups: patients in group 1 received Prospekta in a dosage of 2 tablets two times a day for 24 weeks, and patients in group 2 received Placebo according to the study drug regimen.

RESULTS: Patients in both groups had no differences in demographic and baseline clinical characteristics. Administration of Prospekta for 24 weeks reduced cognitive impairment in patients with vascular dementia compared to the placebo group. The mean MoCA score increased from 17.0±3.6 [17.1±3.6] to 20.5±4.7 [20.4±4.7] in patients treated with Prospekta, whereas it increased from 17.3±3.7 [17.3±3.8] to 19.2±4.9 [19.2±5.0] in the Placebo group. Treatment with the medication also reduced the severity of neuropsychiatric symptoms as measured by the NPI-C scale. The mean score on this scale decreased from 57.0±26.7 [56.7±25.4] to 39.8±23.6 [39.8±23.5] in the Prospekta group and from 55.5±25.5 [55.3±24.4] to 42.8±27.6 [42.3±25.3] in the Placebo group. The difference in mean MoCA and NPI-C scores between the Prospekta and Placebo groups was statistically significant.

CONCLUSION: Prospekta is an effective and safe drug for treating cognitive, behavioural and mental disturbances in patients with vascular dementia.

PMID:37490664 | DOI:10.17116/jnevro202312307141