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Nevin Manimala Statistics

Nasopharyngeal carriage, antimicrobial susceptibility patterns, and associated factors of Gram-positive bacteria among children attending the outpatient department at the University of Gondar Comprehensive Specialized Hospital, Northwest Ethiopia

PLoS One. 2024 Aug 28;19(8):e0308017. doi: 10.1371/journal.pone.0308017. eCollection 2024.

ABSTRACT

BACKGROUND: Gram-positive bacteria residing in the nasopharynx can lead to severe illnesses in children, such as otitis media, pneumonia, and meningitis. Despite the potential threat, there is a lack of comprehensive data regarding the carriage rates of these bacteria among children in outpatient departments in the study area.

OBJECTIVE: This study aimed to assess the nasopharyngeal carriage, antimicrobial resistance patterns, and associated factors of Gram-positive bacteria among children attending the outpatient department at the University of Gondar Comprehensive Specialized Hospital, Northwest Ethiopia.

METHODS: A hospital-based cross-sectional study was conducted from May 1, 2023, to August 30, 2023. A total of 424 nasopharyngeal swab samples were collected using sterile nasopharyngeal swabs, inoculated on Blood Agar and Mannitol Salt Agar plates, and identified through colony morphology, Gram stain, and biochemical tests. Antimicrobial susceptibility of the identified bacterial isolates was determined employing both the Kirby-Bauer and modified Kirby-Bauer methods. D-tests were conducted using clindamycin and erythromycin discs to detect inducible clindamycin resistance, while cefoxitin disc tests were utilized to ascertain methicillin resistance. Data entry was executed using Epi-Data version 4.6, and subsequent analysis was performed utilizing SPSS version 25. Bivariable and multivariable logistic regression analyses were employed to identify associated factors. An adjusted odds ratio at a 95% confidence interval with a P-value of < 0.05 was considered statistically significant.

RESULTS: The overall nasopharyngeal carriage rate of Gram-positive bacteria was 296/424 (69.8%, 95% CI: 65.3-74.0). Staphylococcus aureus was the most prevalent 122/424 (28.8%), followed by Streptococcus pneumoniae 92/424 (21.7%). Methicillin resistance was observed in 19/122 (15.6%) of S. aureus and 3/60 (5%) of coagulase-negative staphylococcus (CoNS) species. Inducible clindamycin resistance was 10/122 (8.2%) in S. aureus and 4/53 (7.5%) in coagulase-negative staphylococcus species. Multidrug resistance was found in 146/296 (49.3%, 95% CI: 43.6-55.0) of the isolates. Associated factors with a bacterial carriage were large family size (AOR = 3.061, 95% CI: 1.595-5.874, P = 0.001), having siblings under five years old (AOR = 1.991, 95% CI: 1.196-3.313, P = 0.008), indoor cooking (AOR = 2.195, 95% CI: 1.275-3.778, P = 0.005), an illiterate mother (AOR = 3.639, 95% CI: 1.691-7.829, P = 0.001), and hospital visits (AOR = 2.690, 95% CI: 1.405-5.151, P = 0.003).

CONCLUSION: The study found a high nasopharyngeal carriage of Gram-positive bacteria in outpatient children, including notable levels of methicillin-resistant S. aureus and multi-drug-resistant isolates. Clindamycin, rifampin, and erythromycin were the most effective antimicrobials for the tested isolates. Factors contributing to bacterial carriage include visits to healthcare facilities, larger family sizes, having younger siblings, maternal illiteracy, and indoor cooking. This emphasizes the need for methicillin-resistant S. aureus surveillance in pediatric outpatient settings and community health education, especially for children’s guardians. Additionally, improving household ventilation by separating kitchens from sleeping areas and regular screening of younger siblings in healthcare environments were recommended to reduce bacterial transmission within family members. The study also called for studies with advanced procedures like minimum inhibitory concentration testing and molecular characterization to better comprehend the resistance patterns and genes in circulating bacteria.

PMID:39197069 | DOI:10.1371/journal.pone.0308017

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Nevin Manimala Statistics

Accurate statistical methods to cover the aspects of the increase in the incidence of kidney failure: A survey study in Ha’il -Saudi Arabia

PLoS One. 2024 Aug 28;19(8):e0309226. doi: 10.1371/journal.pone.0309226. eCollection 2024.

ABSTRACT

INTRODUCTION: Chronic kidney disease (CKD) has become more common in recent decades, putting significant strain on healthcare systems worldwide. CKD is a global health issue that can lead to severe complications such as kidney failure and death.

OBJECTIVE: The purpose of this study was to investigate the actual causes of the alarming increase of kidney failure cases in Saudi Arabia using the supersaturated design analysis and edge design analysis.

MATERIALS AND METHODS: A cross-sectional questionnaire was distributed to the general population in the KSA, and data were collected using Google Forms. A total of 401 responses were received. To determine the actual causes of kidney failure, edge and supersaturated designs analysis methods were used, which resulted in statistical significance. All variables were studied from factor h1 to factor h18 related to the causes of kidney failure.

RESULTS: The supersaturated analysis method revealed that the reasons for the increase in kidney failure cases are as follows: h9(Bad diet), h8(Recurrent urinary tract infection), h1 (Not drinking fluids), h6 (Lack of exercise), h14 (drinking from places not designated for valleys and reefs), h18 (Rheumatic diseases), h10 (Smoking and alcohol consumption), h13 (Direct damage to the kidneys), h2 (take medications), h17 (excessive intake of soft drinks), h12 (Infection), h5 (heart disease), h3 (diabetes), h4 (pressure disease), h15 (Dyes used in X-rays), and h11 (The presence of kidney stones) are all valid. The design analysis method by edges revealed that the following factors contributed to an increase in kidney failure cases: h8 (Recurrent urinary tract infection), h6 (Lack of exercise), h7 (Obesity), and h11.

CONCLUSION: The findings showed that there were causes of kidney failure that led to the statistical significance, which is h8 (Recurrent urinary tract infection) and h11 (The presence of kidney stones).

PMID:39197066 | DOI:10.1371/journal.pone.0309226

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Nevin Manimala Statistics

Effects of social and environmental restrictions, and changes in alcohol availability in adolescents’ binge drinking during the COVID-19 pandemic

PLoS One. 2024 Aug 28;19(8):e0309320. doi: 10.1371/journal.pone.0309320. eCollection 2024.

ABSTRACT

AIMS: The aim of the present study was to estimate the evolution of binge drinking since the pre-pandemic period, and throughout the pandemic period with the application and lifting of the restrictions in adolescents aged 12 to 19 years old in school in Central Catalonia.

METHODOLOGY: Quasi-experimental time series study with two samples of adolescents. The first sample (1st wave of survey, pre-pandemic period) was obtained between the months of September 2019 to March 2020 (n = 6621) and the second sample (2nd wave of survey, pandemic period) between the months of October 2021 and March 2022 (n = 7576). The dependent variable was monthly binge drinking. The main independent variable was the period of data collection (1st and 2nd wave), and gender and grade were also included. Twenty-one time slices were performed by fortnight and the binge drinking prevalence of the previous month was extracted in each of them. Interrupted time series analysis was performed and Poisson regression models with robust variance were estimated.

RESULTS: The data indicated a significant increase in the prevalence of binge drinking in certain periods in girls [easing of measures in October, aPR: 2.25 (1.03-4.89); and total lifting of restrictions in February, aPR: 3.29 (1.57-6.89)] and a reduction in consumption in periods of tightening of restrictions. After the upturn before the return to the pre-pandemic situation binge drinking followed a decreasing trend in both sexes [aPR boys: 0.73 (95%CI: 0.66-0.81); aPR girls: 0.78 (95%CI: 0.71-0.86)].

CONCLUSIONS: Periods of community interventions aimed at protecting people’s health have had an impact on other health behaviors or aspects of health such as binge drinking, and differentially across groups and communities.

PMID:39197050 | DOI:10.1371/journal.pone.0309320

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Nevin Manimala Statistics

Relationship of litterfall anomalies with climatic anomalies in a mangrove swamp of the Yucatan Peninsula, Mexico

PLoS One. 2024 Aug 28;19(8):e0307376. doi: 10.1371/journal.pone.0307376. eCollection 2024.

ABSTRACT

Among the set of phenological traits featuring mangrove ecosystems, litterfall production stands out with marked intra-annual and longer-term variation. Furthermore, mangrove forests resilience is one of the most important ecological attribute, reconciling the juxtaposed terrestrial and marine environment such transitional systems occupy. However, world’s mangroves are nowadays facing recurrent climatic events, reflected in anomalies depicted by major drivers, including temperature and precipitation. This physical-environmental setting may either constrain or favor overall forest productivity. A combination of time series analysis (spectral density and cross-correlation techniques) and statistical model fitting (General additive model) was implemented to explore trends in total litterfall of a well-developed mangrove forest in southeastern Gulf of Mexico (Celestun Lagoon, SE Mexico) and potential association with the varying behavior of temperature (°C) and precipitation (mm month-1), highlighting their anomalies. The results are consistent with a synchronous response between litterfall production and climatic variables (mean monthly temperature and total monthly precipitation). Concurrent peak litterfall production in Celestun lagoon with high temperatures and precipitation occurred during June and October, featuring a two-month time lag for the response time. More than half of the litterfall anomalies (53.5%) could be reflecting either multiple sources of climatic anomalies (maximum, minimum, and monthly average temperature and monthly total precipitation) or single point events (cyclone landfall). This relationship dynamics showed an interannual persistence (1999-2010). The structure portrayed by the litterfall time-series was not unequivocally related to climatic anomalies. Arguably, climatic anomalies behave with different intensities and even may exhibit complex interactions among them. The study of anomalies provides a baseline for a better grasp of: i) mangrove anomalies responses and ii) their vulnerability to these extremes.

PMID:39197042 | DOI:10.1371/journal.pone.0307376

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Nevin Manimala Statistics

Long Noncoding RNA NR_030777 Alleviates Cobalt Nanoparticles-Induced Neurodegenerative Damage by Promoting Autophagosome-Lysosome Fusion

ACS Nano. 2024 Aug 28. doi: 10.1021/acsnano.4c05249. Online ahead of print.

ABSTRACT

Potential exposure to cobalt nanoparticles (CoNPs) occurs in various fields, including hard alloy industrial production, the increasing use of new energy lithium-ion batteries, and millions of patients with metal-on-metal joint prostheses. Evidence from human, animal, and in vitro experiments suggests a close relationship between CoNPs and neurotoxicity. However, a systematic assessment of central nervous system (CNS) impairment due to CoNPs exposure and the underlying molecular mechanisms is lacking. In this study, we found that CoNPs induced neurodegenerative damage both in vivo and in vitro, including cognitive impairment, β-amyloid deposition and Tau hyperphosphorylation. CoNPs promoted the formation of autophagosomes and impeding autophagosomal-lysosomal fusion in vivo and in vitro, leading to toxic protein accumulation. Moreover, CoNPs exposure reduced the level of transcription factor EB (TFEB) and the abundance of lysosome, causing a blockage in autophagosomal-lysosomal fusion. Interestingly, overexpression of long noncoding RNA NR_030777 mitigated CoNPs-induced neurodegenerative damage in both in vivo and in vitro models. Fluorescence in situ hybridization assay revealed that NR_030777 directly binds and stabilizes TFEB mRNA, alleviating the blockage of autophagosomal-lysosomal fusion and ultimately restoring neurodegeneration induced by CoNPs in vivo and in vitro. In summary, our study demonstrates that autophagic dysfunction is the main toxic mechanism of neurodegeneration upon CoNPs exposure and NR_030777 plays a crucial role in CoNPs-induced autophagic dysfunction. Additionally, the proposed adverse outcome pathway contributes to a better understanding of CNS toxicity assessment of CoNPs.

PMID:39197041 | DOI:10.1021/acsnano.4c05249

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Nevin Manimala Statistics

Cyclone Freddy and its impact on maternal health service utilisation: Cross-sectional analysis of data from a national maternal surveillance platform in Malawi

PLOS Glob Public Health. 2024 Aug 28;4(8):e0003565. doi: 10.1371/journal.pgph.0003565. eCollection 2024.

ABSTRACT

Climate change poses a significant threat to women’s health in sub-Saharan Africa, yet the impact of climate change on maternal health is rarely reported in the region. Using an existing Maternal Surveillance Platform (MATSurvey), we estimated the immediate impact of Cyclone Freddy on maternal health care service indicators in Malawi. We analysed facility-level data for pregnant women up to 42 weeks post-partum using the national MATSurvey database. We compared incidences of service utilisation before (1 January to 19 February 2023) and after (20 February to 30 March 2023) the cyclone using a negative binomial regression approach. Between 1 January and 30 March 2023, a total of 37,445 live births, 50,048 antenatal clinic attendances, 23,250 postnatal clinic attendances, 84 maternal deaths, and 1,166 neonatal deaths were recorded by 33 facilities in the MatSurvey database. There was an immediate reduction in service utilisation in the post-cyclone period, including the postnatal attendance per week (pre-cyclone median: 355.0 [IQR 279.0-552.0], post-cyclone median: 261.0 [IQR 154.3-305.5], RR 0.56 [95% CI 0.44-0.71, p <0.001]) and the antenatal attendance per week (pre-cyclone median: 860.0 [IQR 756.5-1060.0], post-cyclone median: 656.5 [IQR 486.5-803.3], RR 0.66 [95% CI 0.55-0.78, p <0.001]). Stratified analyses by geographical zones revealed a stronger reduction in postnatal clinic attendance in the Southwest (RR 0.50 [95% CI 0.29-0.85, p = 0.010]) and the North (RR 0.29 [95% CI 0.15-0.56, p <0.001]). Cyclone Freddy resulted in an immediate decline in utilisation of maternal health services in cyclone-affected regions in Malawi. We observe evidence of catastrophic climate events impacting on the healthcare of women and their babies. Policymakers, researchers, and health systems need to ensure that essential women’s health services are maintained during these events and improve measures to support service resilience in the face of climate change.

PMID:39197033 | DOI:10.1371/journal.pgph.0003565

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Nevin Manimala Statistics

Metrics used in quality improvement publications addressing environmental sustainability in healthcare: A scoping review protocol

PLoS One. 2024 Aug 28;19(8):e0309417. doi: 10.1371/journal.pone.0309417. eCollection 2024.

ABSTRACT

Quality improvement approaches are increasingly being used to address the problem of healthcare’s climate and ecological impact. While sustainability is increasingly recognized as a domain of quality, consensus is lacking on the most appropriate measures and metrics for those looking to reduce ecological impacts through quality improvement initiatives. We propose a scoping review to summarize approaches for selecting and quantifying ecological impacts in the published quality improvement literature. We will search multiple electronic databases (MEDLINE, EMBASE, CINAHL, and Scopus) from 2000 onwards, to identify published quality improvement initiatives in the human healthcare setting intended to address ecological impact with at least one quantitative measure of ecological impact, such as kilograms of carbon dioxide equivalent greenhouse gas. Two independent reviewers working in parallel will screen studies for inclusion and abstract study data, including publication, study, and ecological impact characteristics. Charted data will be synthesized narratively as well as with descriptive tables, figures, and summary statistics. In doing so, we will map areas of relative focus as well as gaps in the measurement of ecological impact across quality improvement initiatives. This map can in turn be used to raise awareness of ecological impacts requiring broader consideration, encouraging holistic and clinically relevant approaches to measuring ecological impact in future quality improvement work.

PMID:39197032 | DOI:10.1371/journal.pone.0309417

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Nevin Manimala Statistics

Sex-specific association of chronic proton pump inhibitor use with reduced bone density and quality

J Clin Endocrinol Metab. 2024 Aug 28:dgae598. doi: 10.1210/clinem/dgae598. Online ahead of print.

ABSTRACT

CONTEXT: Chronic use of proton pump inhibitors (PPIs) has been associated with an increase in bone fragility. However, evidence on the effect of chronic PPI use on bone density is conflicting, and data on bone microarchitectural quality are scarce.

OBJECTIVE: The primary aim of this study was to evaluate whether trabecular bone microarchitecture, assessed by trabecular bone score (TBS), is altered in chronic PPI users. The association between PPI use and bone density was also evaluated as a secondary endpoint.

METHODS: We extracted individual patient data from the 2005-2008 cycles of the population-based National Health and Nutrition Examination Survey (NHANES), in which lumbar spine dual-energy X-ray absorptiometry (DXA) scans were acquired. TBS values were calculated from DXA images using a dedicated software. Multivariable linear regression analyses stratified by sex were performed to evaluate the association of chronic PPI use with TBS and bone mineral density (BMD), adjusting for relevant confounders.

RESULTS: A total of 7478 subjects were included (3961 men, 3517 women). After adjustment for relevant confounders, chronic PPI use was associated with a worse bone health profile in men, with lower TBS (-0.039, 95%CI:[-0.058, -0.020], p<0.001), lumbar spine T-score (-0.27, 95%CI:[-0.49, -0.05], p=0.018), total hip T-score (-0.20, 95%CI:[-0.39, -0.01], p=0.038), and femoral neck T-score (-0.21, 95%CI:[-0.42, -0.01], p=0.045). Notably, the association between chronic PPI use and degraded TBS remained statistically significant even after further adjustment for BMD at lumbar spine and femoral neck (-0.026, 95%CI:[-0.039, -0.012], p=0.001). In contrast, no significant association was observed between chronic PPI use and either TBS or BMD in women.

CONCLUSIONS: Chronic PPI use is associated with degraded trabecular bone quality in men, even after adjustment for BMD. No association was observed in women.

PMID:39197024 | DOI:10.1210/clinem/dgae598

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Nevin Manimala Statistics

Assessment of swallowing performance in patients with neurodegenerative disease: A hierarchical cluster analysis

Brain Behav. 2024 Sep;14(9):e70005. doi: 10.1002/brb3.70005.

ABSTRACT

BACKGROUND: Swallowing is a complex process that alters with age and neurological diseases; swallowing disorders can be a consequence of both of them. As an advanced multivariate statistical method, hierarchical cluster analysis (HCA) was utilized to make the dendrograms, which was used to find the relationship between the variables. The purpose of this study is to ascertain the type of clustering exhibited by the variables using HCA and to evaluate the approach to major neurodegenerative diseases (MND) with swallowing disorders based on the results obtained.

METHODS: Data were collected from a total of 173 patients from various neurological diagnoses, such as dementia, Parkinson’s disease, stroke and polyneuropathy, aging between 42 and 104 (mean of age 72.85) by using the Montreal Cognitive Assessment, the Edinburgh Feeding Evaluation Scale (EdFED), the Eating Assessment Tool (EAT-10), and the Modified Mann Swallowing Ability test. From the collected data, dendrograms were formed by using HCA with Ward linkage method.

RESULTS: Based on cluster analysis results, clusters demonstrate statistical significance. They center around EdFED, EAT-10, and age in each MND. In healthy individuals, variables are not clustered as in the patient group. This study holds importance as it can give clinicians a different perspective on determining and managing the elderly population’s swallowing problems.

CONCLUSIONS: The HCA method explicitly proposes which variables should be examined concurrently in the clinic for MND. This research is one of the pioneering studies conducted by using the HCA method.

PMID:39197023 | DOI:10.1002/brb3.70005

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Nevin Manimala Statistics

Resistance training leading to repetition failure increases muscle strength and size, but not power-generation capacity in judo athletes

PLoS One. 2024 Aug 28;19(8):e0307841. doi: 10.1371/journal.pone.0307841. eCollection 2024.

ABSTRACT

Strength-trained athletes has less trainability in muscle size and function, because of their adaptation to long-term advanced training. This study examined whether resistance training (RT) leading to repetition failure can be effective modality to overcome this subject. Twenty-three male judo athletes completed a 6-week unilateral dumbbell curl training with two sessions per week, being added to in-season training of judo. The participants were assigned to one of three different training programs: ballistic light-load (30% of one repetition maximum (1RM)) RT to repetition failure (RFLB) (n = 6), traditional heavy-load (80% of 1RM) RT to repetition failure (RFHT) (n = 7), and ballistic light-load (30% of 1RM) RT to non-repetition failure (NRFLB) (n = 10). Before and after the intervention period, the muscle thickness (MT) and the maximal voluntary isometric force (MVC) and rate of force development (RFDmax) of elbow flexors were determined. In addition, theoretical maximum force (F0), velocity (V0), power (Pmax), and slope were calculated from force-velocity relation during explosive elbow flexion against six different loads. For statistical analysis, p < 0.05 was considered significant. The MT and MVC had significant effect of time with greater magnitude of the gains in RFHT and NRFLB compared to RFLB. On the other hand, all parameters derived from force-velocity relation and RFDmax did not show significant effects of time. The present study indicates that ballistic light-load and traditional heavy-load resistance training programs, leading to non-repetition failure and repetition failure, respectively, can be modalities for improving muscle size and isometric strength in judo athletes, but these do not improve power generation capacity.

PMID:39197005 | DOI:10.1371/journal.pone.0307841